Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2274 ATGACGAAAAAGCCCAAGGCGGATGGAGCGGAGGATCCTTTGCCGGACCACCTCCGGTGCGGGCGCACCGACGGCCGGCAATGGCGGTGCCGGCGGCGAGTGAAGGACAATCTGAAGCTTTGCGAGATTCACTACCTCCAAGGTCGCCATCGGCAGTACAAGGAGAAGGTTCCGGAGTCCTTGAAGCTTCAGCGGAAGCGCAAGACAAGCGAGGAGGAGCCTAATGCTGTGGACAATGTCGAATCTAGGGCACGGAGAACCTCGAGAATCGTGAAGAAGAAGCGCAGGCTTTTTGAGGGTTCGGAAGCGCTGGTGGTGGCGGCTCCTTCTCCCGCGAAGAAGAAGGCGCTGAAGCAGGGCGATATGCAGTTGGAACTCATAAGGATGGTTCTCAAGAGAGAGGCGGAGAAGAAGAACAAAAACAACAAGAGCAAGAAGAAGAATAAAAAGAAGAACAAGAAGAAGAAGAAAAAAGAGGAGGAAGAGGAATTGTGTTACGGTGAAGGGGAGCTGAGGAGGGAATTGCCAAATGGTGTGATGGAAATTTCTCCGGCTTCGCCGACCCGTGATTACGACAATGTGGCTTCGCATTTTGACGTGAAAGTTGGTGTTGATTCTAAAACTGTTACTCCACGTTACTTTAGGTCCAAGAATGTTGATAGAGTCCCGGTGGGGAAGTTGCAGATTGTGCCGTATGGATCGAACTTGAAGAAGGGTACCAAGGGTAAGAGGAAGAAGTGTCATTGGTGCCAGAGAAGCGAGTCTTGCAATCTCATCCAGTGCTTGAGCTGTGAGAGGGAGTTTTTCTGCATGGATTGCATTAAAGAGCGGTATTTGGACACTCAAAATGAAGTTAAGAAGGCATGCCCAGTTTGTCGTGGAACTTGCAGTTGTAAGGATTGCTCAGCAAGTCAATGTAAAGACAGTGAAAGTAAGGAATATTTGACCGGTAAGAGCAGAGTTGATAGAATATTGCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTACTAAAGCATATAAGTGAAGATCAGAATATTGAGCTAGAGACAGAAGCAAAAGTTAAAGGAAAGAATATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGCTGCAACGAGAAAAATTATTGCAATCACTGCAAGACACCCATTTTGGATCTCCATAGAAGCTGTCCGAGCTGTTCGTATAGCCTATGCTCGAGTTGTTGTCAGGAATTAAGTCAAGGAAAAGCTTCTGCAGAAATTAACTTATCTACTTTCAATCGACCTGATAAAATGAAAACTAGTAGTGCTAGTGAGAGCCAGATTTTGGACGAGAAGGCCATATCTAGTGGCAATTTAATTGATACTTCAGTAATGCCTGAGTGGACAAATTGTAATGGCATTGATTGTCTATCATGCCCTCCTACAGAGCTTGGTGGTTGTGGTAATAGCCACCTTGAGTTGAGATCTGTTTTCCCCTCCAATTGGATCAAAGAGATGGAAGTAAAGGCAGAAGAAATTGTTTGCAGCTATGACTTTCCTGAAACTTCAGATAAAAGTTCAAGCTGCTCGTTGTGTTTTGACACCGATCACAATACTAACAGATACAAGGAGTTGCAAGAAGCAGCTCTAAGAGAAGATTCCAATGATAATTACTTGTTTTGTCCGACAGTGTTGGACATCACTGGTGATAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGTCATCCTATAGTGGTCCAAGATGTGCTCCAAAGTACATCAAACCTCAGCTGGGATCCACTGATCATGTTCTGTACTTATCTTGAGCAGAATATTACGAGATATGAGAATAATAAAAACGTACTTGAATCTTGTTTGGATTGGTGGGAGGTTGAAATTAACATTAGGCAGTACTTTACTGGCTCTGTAAAACGCCGTCCTCAAAGAAATACTTGGCACGAGATGCTCAAACTAAAGGGGTTGCTTTCTTCCCAAATATTCAAAGAGCAGTTTCCAGCTCATTTTGCCGAGGTAATTGATGCTCTACCAGTTCCAGAGTACATGCATCCCTGGTCAGGCCTTCTGAATTTAGCTGCAAATTTGCCACATGGGAGTGCAAAACATGACATTGGACCATATCTCTATATTTCTTATGGCTCTGCTGACAAAGAAACTGATTCTGTGACAACACTCTGCTATGATCCATATGATGTGGTTAATATTATGACACATACCACAGATGCCCCCCTCTCTACAGAACAACTTACAAAAATAAGAAAATTACTGAAAAAGCACAAAACTCTGTGTCAAATGAAGACTATTGCTACTGAGGAGCCGCAGGAACAAAAAGTGAATGGAATGCAATTATTGCATGTTGAAGAAACGGAGCAAGGAGGCTTGCAGAGTATTGTTGAAGAAAGAATGAACTTTTTCAGGAGAGTCAATAGAACGTCTTGCATCTCAACTGAAGTTAAAAGAGTTTCTAGTCAGAGCATGGACAGCAATATTTCCCAGAATGGAGAATGTGATTTCTTCACTGAATCTGATTCCGGACGCACTTTACTTCTCCTTGGGACTGTTCAAACTACTGAAATCTCTAAACAGGATATTCCTAGAAAATCCTTTGAAAGCTCAAAAGGACGTAAAAATAAGTTTACTGAGCATTTGGGCGCCCAGTGGGATGTCTTTCGCAGACAAGATGTACCAAAGCTTATAGAATACCTTAAACGACATTATGATGAATTTTCTTATACACGTGACTATCACAAGAAGATGGTTCACCCAATTCTAGATCAGAACATTTTTCTTGATAATACTCACAAAAGGAGACTAAAGGAGGAATTTAAGATTGAACCATGGTCTTTTCAGCAACACGTTGGACAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATCAGGAATTCTAAGTCTTGTGTTCATGCGGTATTGGAATTTGTGTCCCCTGAAAATGTTACCGAGGGTATCCATTTGATTGATGAGGTCCGACTATTGCCTGAAGATCATAAAGCAAAAGCAGATATGCTGGAGGTAAAGAAAATGGCGCTTCATAGTATGAATACCGCAATTAAAGAAGTACGTCAGCTTACAAGCAAAACATGA 3093 0.4258 MTKKPKADGAEDPLPDHLRCGRTDGRQWRCRRRVKDNLKLCEIHYLQGRHRQYKEKVPESLKLQRKRKTSEEEPNAVDNVESRARRTSRIVKKKRRLFEGSEALVVAAPSPAKKKALKQGDMQLELIRMVLKREAEKKNKNNKSKKKNKKKNKKKKKKEEEEELCYGEGELRRELPNGVMEISPASPTRDYDNVASHFDVKVGVDSKTVTPRYFRSKNVDRVPVGKLQIVPYGSNLKKGTKGKRKKCHWCQRSESCNLIQCLSCEREFFCMDCIKERYLDTQNEVKKACPVCRGTCSCKDCSASQCKDSESKEYLTGKSRVDRILHFHYLICMLLPVLKHISEDQNIELETEAKVKGKNISDIQIKQVEFGCNEKNYCNHCKTPILDLHRSCPSCSYSLCSSCCQELSQGKASAEINLSTFNRPDKMKTSSASESQILDEKAISSGNLIDTSVMPEWTNCNGIDCLSCPPTELGGCGNSHLELRSVFPSNWIKEMEVKAEEIVCSYDFPETSDKSSSCSLCFDTDHNTNRYKELQEAALREDSNDNYLFCPTVLDITGDNFEHFQKHWGKGHPIVVQDVLQSTSNLSWDPLIMFCTYLEQNITRYENNKNVLESCLDWWEVEINIRQYFTGSVKRRPQRNTWHEMLKLKGLLSSQIFKEQFPAHFAEVIDALPVPEYMHPWSGLLNLAANLPHGSAKHDIGPYLYISYGSADKETDSVTTLCYDPYDVVNIMTHTTDAPLSTEQLTKIRKLLKKHKTLCQMKTIATEEPQEQKVNGMQLLHVEETEQGGLQSIVEERMNFFRRVNRTSCISTEVKRVSSQSMDSNISQNGECDFFTESDSGRTLLLLGTVQTTEISKQDIPRKSFESSKGRKNKFTEHLGAQWDVFRRQDVPKLIEYLKRHYDEFSYTRDYHKKMVHPILDQNIFLDNTHKRRLKEEFKIEPWSFQQHVGQAVIIPAGCPYQIRNSKSCVHAVLEFVSPENVTEGIHLIDEVRLLPEDHKAKADMLEVKKMALHSMNTAIKEVRQLTSKT* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2274 1030 ProSiteProfiles Zinc finger RING-type profile. 247 293 IPR001841 -
Pvu2g2274 1030 SUPERFAMILY Clavaminate synthase-like 560 1016 - -
Pvu2g2274 1030 Coils Coil 128 164 - -
Pvu2g2274 1030 MobiDBLite consensus disorder prediction 133 162 - -
Pvu2g2274 1030 Pfam WRC 15 56 IPR014977 -
Pvu2g2274 1030 MobiDBLite consensus disorder prediction 55 81 - -
Pvu2g2274 1030 Pfam JmjC domain, hydroxylase 879 971 IPR003347 -
Pvu2g2274 1030 Gene3D Cupin 552 1002 - -
Pvu2g2274 1030 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Pvu2g2274 1030 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 11 1029 IPR045109 GO:0032454|GO:0033169
Pvu2g2274 1030 SMART cupin_9 661 993 IPR003347 -
Pvu2g2274 1030 ProSiteProfiles JmjC domain profile. 680 993 IPR003347 -
Pvu2g2274 1030 MobiDBLite consensus disorder prediction 1 22 - -
Pvu2g2274 1030 MobiDBLite consensus disorder prediction 139 154 - -
Pvu2g2274 1030 PANTHER PROTEIN B160 11 1029 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2274 Pvu-Chr2 38444637 38450718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2274 7 104 GRF Transcription Factor Family AT4G37740 36.538 9.18e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pvu2g2274 JmjC 2.8e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2274 K15601 - gmx:100810673 1721.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2274 2 38444637 38450718 Pvu6g2002 6 30046299 30052736 PCT