Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2266 ATGAGCCAAACACATAAGCATAAAATATGGCTGCTAAGCTCTTTGATTCTACTCTTCACCTTCCAATTTTGTTCTTGTTCTGATACCATATCTACTGACAAAGCCATCAGAGATGGCGAACTTGTTGTTTCCAAAGCCAAAACCTTTGCTCTTGGATTTTTCAGTCCAGGAAAATCCAAATCCCGCTATTTGGGAATATGGTTCAACAACGTGCAAGAACAAACTGCTGTTTGGGTTGCAAACAGAAACACTCCCATCAACGACACCTCTGGGGTTCTCTCAATCAACCCAGATGGAAACCTAGTCCTCCACCACAACTATAGCTCTAGTCCCATTTGGTCTACCAGTGTTTCACTCACCCAATCAAATAGCACTAGCACTAACGTCATAGCTCAACTCTCAGACCTAGCAAACCTTGTTCTGATTCTTAACGACACCAAAACTGTCATCTGGCAAAGCTTTGATCATCCCACAGACACCTTGATTCCATATCTAAGAATTGGTTTTGACAGAAGAGCTAACCAGAGTTGGATCCTCCAATCTTGGAAGACAGATGATGACCCCGGAACAGGTTCTTACACATTGGAACTGAGCAGAAGTGGGAAGCCACAGTTGTTCTTGTATCACCAGAACCTTCCCTTGTGGCGAGGAGGATCGTGGAACGGTGAATTATTTATGGGTGTACCCAACATGAAAAGAGATTTGCTTACATTTAATGTTTCTTTTACGGAAGATGACAACCTCGTAGCACTCTCATTTAACCCGCTTCATAAGTCCTTGATCACTTGGGTGGTAGTTCAGCAATCAGGTTTCTTTAATGTATTCACTTGGGATAACCAAAAGAATCAGTGGAACAGGTACTGGTCTGTGCCAATAAACCAATGTGATAACTATGGAACGTGTGGATCCAACGGTAAATGTAACCCTTTGAACTTTGACGAATTTCGGTGTACTTGTCTACCTGGGTTTGAACCCAAATCCACAAATGATTGGTATGATAACAGAGATGGGTCAGGAGGGTGCGTGAGGAAGCAAGGTGCATCCGTTTGTGGGAATGGAGAAGGGTTTGTGAAACTTGAAGGCTTGAAGCTTCCTGATACCTCCGAGGCAACTGCCAAAGAGGGTTGGAGTTTGGAAAAGTGTGGGGAGGATTGCTTGAGAAACTGCTCTTGCACTGCATATGCAGTTCTTGATGTAAGAAATGGTGGAAGTGGGTGCTTGGCATGGCATGGAAATTTGATAGACATACAAAAACTGAGTGATCAAGGCCAAGATTTATTTGTCCGTGTTGATGCAGTTGAACTAGCAAATTATAACAAAAAAACTAAAGGATTACGCGGTAAAAAGAGGATGGTTACAGTTCTGATTGCTTCAGTACTAACAAGTTTCATTATCCTCTCCGGTCTGTATTACCTCTCCAAGAAAAAAAGCAAAGATAAAGTGATGCAACATTTAAACCAATTTTACCCTGAAGACGACCACGATATCCAAAGCAACACACATTCAAACCTTCCCTTCTTCAGCCTTAAAGTGATAACGGAAGCCACAAGAAATTTTGGTGATGAGAATATGCTTGGGCAAGGTGGATTTGGTTCTGTCTATAAG 1605 0.4224 MSQTHKHKIWLLSSLILLFTFQFCSCSDTISTDKAIRDGELVVSKAKTFALGFFSPGKSKSRYLGIWFNNVQEQTAVWVANRNTPINDTSGVLSINPDGNLVLHHNYSSSPIWSTSVSLTQSNSTSTNVIAQLSDLANLVLILNDTKTVIWQSFDHPTDTLIPYLRIGFDRRANQSWILQSWKTDDDPGTGSYTLELSRSGKPQLFLYHQNLPLWRGGSWNGELFMGVPNMKRDLLTFNVSFTEDDNLVALSFNPLHKSLITWVVVQQSGFFNVFTWDNQKNQWNRYWSVPINQCDNYGTCGSNGKCNPLNFDEFRCTCLPGFEPKSTNDWYDNRDGSGGCVRKQGASVCGNGEGFVKLEGLKLPDTSEATAKEGWSLEKCGEDCLRNCSCTAYAVLDVRNGGSGCLAWHGNLIDIQKLSDQGQDLFVRVDAVELANYNKKTKGLRGKKRMVTVLIASVLTSFIILSGLYYLSKKKSKDKVMQHLNQFYPEDDHDIQSNTHSNLPFFSLKVITEATRNFGDENMLGQGGFGSVYK 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2266 535 Pfam S-locus glycoprotein domain 215 327 IPR000858 GO:0048544
Pvu2g2266 535 CDD EGF_CA 292 327 - -
Pvu2g2266 535 CDD B_lectin 36 157 IPR001480 -
Pvu2g2266 535 Gene3D Phosphorylase Kinase; domain 1 489 535 - -
Pvu2g2266 535 SMART blect_4 33 157 IPR001480 -
Pvu2g2266 535 CDD PAN_AP_plant 351 430 - -
Pvu2g2266 535 ProSiteProfiles PAN/Apple domain profile. 350 431 IPR003609 -
Pvu2g2266 535 Pfam D-mannose binding lectin 75 183 IPR001480 -
Pvu2g2266 535 ProSiteProfiles EGF-like domain profile. 291 329 IPR000742 -
Pvu2g2266 535 Gene3D Hepatocyte Growth Factor 348 428 - -
Pvu2g2266 535 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 188 IPR036426 -
Pvu2g2266 535 SMART ntp_6 351 430 IPR003609 -
Pvu2g2266 535 PANTHER - 21 535 - -
Pvu2g2266 535 Gene3D - 22 155 IPR036426 -
Pvu2g2266 535 Pfam PAN-like domain 350 416 IPR003609 -
Pvu2g2266 535 ProSiteProfiles Bulb-type lectin domain profile. 27 154 IPR001480 -
Pvu2g2266 535 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKS1 21 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2266 Pvu-Chr2 38374827 38377676 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2266 435 535 Receptor kinase-like Gene Family AT4G04500 29.703 8.84e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2266 - - pvu:PHAVU_002G2200000 1098.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2266 2 38374827 38377676 Pvu6g2017 6 30137334 30142218 PCT