Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2262 ATGGCGACTCATCATCTTCCCGACCACTTCAAGTGTCCAATTTCCCTAGAAATAATGTCGGACCCCGTAATCCTCTCGTCGGGTCACACCTTCGACCGTTCCTCAATCCAACGTTGGCTAGACGCAGGCTACAGAACATGTCCAATTACCAAATTGCCCCTTCCCGACCAACCTTCCCTCATTCCCAACCACGCGCTCCGAAGCTTAATCTCCAACTACACCCTCCTACCCCCTCTCCACCAAACCATTTCCCAACCCCAAACCCTAATTTCCACCCTCACCTCTCCCTCTTCTTCCTCCGATTCCAAAATCGATTCCCTCCGCCATCTCACGCGCCTCTCCAAGCGCGACTGCGCCTTCCGCCGCCACCTCGCCGACTCCGCAGCCGTCCCCGCCGTCCTCGCCGCCGTCGTCGACCCCGCTCTCCAGGAGAAGGCGCTGCTGCTTCTCCTTAACCTCACCCTCGACGACGACTCCAAGGTCGGACTCGTCGCCGAGGGCGTCGTCGCGCGCCTCGTCGCCGTTCTCCTCAACGCGCCGCCTGACTGCCGCGCCGTGGCGGCCACCATCGTCACCAGCCTCTCTGTTGTCGAGGTCAACAGGGCCACCATCGGCGCTTTCCCGGCGGCGATCGCGGCGCTCGTGGCGATTCTCCGTGACGGCAAAGGGAGGGAGAGGAAGGAGGCCGCCACCGCGCTCTACGCGCTCTGTTCCTTTCCGGATAACCGGAGAAGAGCAGTGAATTGCGGCGCGGTGCCGATTCTGCTTCGGAACGTAGAAATTGGATTGGAACGGTGCGTTGAGGTAATTGGCGTTCTGGCGAAGTGTAAGGAAGGGAGAGAGCAAATGGAAGGTTATAACGGTTGTGCTCAGATTCTGGCTCGCGTTTTGAGGAACGGAAGCTCCAGGGGGGTTCAGTATGCGCTTTTCGCACTTACTTCGCTTTGCTTGTATAGCCAGCGAATGGTGCTGTTGGCTCAGGAAGAAGGTGTTCTGGAAGCTTCTATTGTATTCGTGGAAGATGATAATGAGAAAGTGAGGAGGAATGCGTGTAATTTGATTCGGGCTCTCCGTGGCAACAACAGCAACCACGATCGGGTGGACTGA 1107 0.579 MATHHLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGYRTCPITKLPLPDQPSLIPNHALRSLISNYTLLPPLHQTISQPQTLISTLTSPSSSSDSKIDSLRHLTRLSKRDCAFRRHLADSAAVPAVLAAVVDPALQEKALLLLLNLTLDDDSKVGLVAEGVVARLVAVLLNAPPDCRAVAATIVTSLSVVEVNRATIGAFPAAIAALVAILRDGKGRERKEAATALYALCSFPDNRRRAVNCGAVPILLRNVEIGLERCVEVIGVLAKCKEGREQMEGYNGCAQILARVLRNGSSRGVQYALFALTSLCLYSQRMVLLAQEEGVLEASIVFVEDDNEKVRRNACNLIRALRGNNSNHDRVD* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2262 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 75 IPR013083 -
Pvu2g2262 368 SUPERFAMILY RING/U-box 5 74 - -
Pvu2g2262 368 CDD RING-Ubox_PUB 10 51 IPR045210 -
Pvu2g2262 368 PANTHER U BOX DOMAIN-CONTAINING 2 362 - -
Pvu2g2262 368 Pfam U-box domain 7 73 IPR003613 GO:0004842|GO:0016567
Pvu2g2262 368 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Pvu2g2262 368 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 362 - -
Pvu2g2262 368 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Pvu2g2262 368 Gene3D - 86 367 IPR011989 -
Pvu2g2262 368 SUPERFAMILY ARM repeat 87 357 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2262 Pvu-Chr2 38326922 38328615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2262 6 359 U-box Gene Family AT4G21350 57.808 6.57e-138 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2262 - - gmx:100785141 537.339