Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2229 ATGGAGGACCCTAATTTTCTTCGTCAGTGGCACCTGAGTTCTATTGATGATCCTAACTTACTGCCAGTAGCTGCTGCTTTTGGAGAGACTTTTCAACATCATGCATTCACTTATCCAGACTTCAATCCCAAAGCTTCCATGGAAACTACACTTACTGACATTGAAAGACCAACAAAACATCACAAAAACATCAGCTGGAATCCCAACAAAAGTGCTGCTCAGACATCAGATACACAATTTGTTTCTTTCCCAAATCTTGTTTCGTTTATGGATTCCAATCACATAAGTCCATTGGGATTAGTGAAGGCCAATGAGATGGCTTGTCCTATAACCAATAGCACAACTTCTCTGGACACTATCTCTCAAGGAATCTTGGGGAATCATAACTATCTCTTTAAGGCTTGCCAAGAGACCAAAAAGATTGGAAGACGTTCCAAAATTTATCAACCTCCAGACCACATCATAGCTGAAAGGAAGCGAAGAGAGAAGCTCAGCCAGCGGTTCATTGCTTTATCTGCCCTTGTTCCTGGACTACAGAAGACGGACAAAGCTTCTATTCTTGGAGATGCTATCAACTACTTGAAGCAATTGCAAGAGAAAGTAAAGGCTCTTGAGGAGGAACGAAACATGAAGAAAACTGTGGAGTCTGTGGTAATTTTGAAGAAACCTCAACTATCCAATGATGGTAACACCTCTTCTTCAGAATATGATGGTCCATTATTTGACGGAACAATACCTGAAATTGCAGCAAGATTTTGTGAGAGAAATGTCCTCATAACAGTTCACTGTGAGAAGACCAAAGGAGTTGTGGAAAAAACAATCCATGAAATTGAGAATCTCCATCTGAAAGTCACCAACAGCAATGCCATGACATTTGGGAGATGTGCCATTGATATAACAATTATTGCTCAGATGGATATGGAATTTTGCATGGAAGTGAAGGATGTAGTGAGAAACCTGCGCTCAGCTTTTACATCTTTCATGTGA 987 0.4043 MEDPNFLRQWHLSSIDDPNLLPVAAAFGETFQHHAFTYPDFNPKASMETTLTDIERPTKHHKNISWNPNKSAAQTSDTQFVSFPNLVSFMDSNHISPLGLVKANEMACPITNSTTSLDTISQGILGNHNYLFKACQETKKIGRRSKIYQPPDHIIAERKRREKLSQRFIALSALVPGLQKTDKASILGDAINYLKQLQEKVKALEEERNMKKTVESVVILKKPQLSNDGNTSSSEYDGPLFDGTIPEIAARFCERNVLITVHCEKTKGVVEKTIHEIENLHLKVTNSNAMTFGRCAIDITIIAQMDMEFCMEVKDVVRNLRSAFTSFM* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2229 328 Coils Coil 187 214 - -
Pvu2g2229 328 SMART finulus 154 203 IPR011598 GO:0046983
Pvu2g2229 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 197 IPR011598 GO:0046983
Pvu2g2229 328 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 1 327 - -
Pvu2g2229 328 CDD bHLH_AtNAI1_like 152 222 - -
Pvu2g2229 328 Pfam Helix-loop-helix DNA-binding domain 153 198 IPR011598 GO:0046983
Pvu2g2229 328 Gene3D - 151 221 IPR036638 GO:0046983
Pvu2g2229 328 PANTHER BHLH TRANSCRIPTION FACTOR 1 327 - -
Pvu2g2229 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 212 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2229 Pvu-Chr2 37921702 37923239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2229 152 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 53.333 6.55e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu2g2229 HLH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2229 - - vun:114179595 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2229 2 37921702 37923239 Pvu2g2229 2 37921702 37923239 ECH
Pvu2g2229 2 37921702 37923239 Pvu6g2056 6 30360507 30363312 PCT