Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2216 ATGGGGAGAGGAAAGATCGTGATTCAAAGGATTGACAATTCGACTAGCCGGCAAGTGACGTTTTCCAAGAGAAGAAGTGGATTGGTGAAGAAAGCTAGAGAGCTATCTATTCTGTGTGATGCAGAAGTTGGATTAATTGTCTTCTCCAGCACTGACAAGCTTTATGACTATGCTAGCTCAAGCTTGAAATCTGTTATTGATCGCTATAACAAGTTCAAAGAGGACCCTCATCAGTTAATGAACCCTGCTTTAGAAATCAAG 261 0.41 MGRGKIVIQRIDNSTSRQVTFSKRRSGLVKKARELSILCDAEVGLIVFSSTDKLYDYASSSLKSVIDRYNKFKEDPHQLMNPALEIK 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2216 87 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pvu2g2216 87 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 86 - -
Pvu2g2216 87 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pvu2g2216 87 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 86 - -
Pvu2g2216 87 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Pvu2g2216 87 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Pvu2g2216 87 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pvu2g2216 87 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu2g2216 87 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu2g2216 87 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu2g2216 87 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu2g2216 87 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2216 Pvu-Chr2 37756299 37758495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2216 1 87 MADS-box Gene Family AT4G37940 80.460 5.50e-47 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu2g2216 SRF-TF 5.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2216 K09264 - tcc:18608170 150.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2216 2 37756299 37758495 Pvu6g2076 6 30509865 30511901 PCT