Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2198 ATGGATATGGTGAATAATCGATGCCAAAACGGGGAAGAGCCGCAGGTGGATGTCCTCAGTTACGCCAATGGTTCCGATGAAGGGGAAGAAGCTGCAACTTGTCCGCCTGTCCATGCTTCTTCTGTTTTGCACACCAGAACCAGTGAACTTACCATTTCCTTTGAGGGCGAGGTCTATGTTTTCCCTGCTGTTACTCCACAAAAGGTGCAGGCTGTATTATTACTGTTGGGAGGGCAGGAGATGCCCAATACCGTCCCCACCTCAAACTTTTTGTTGCAGCAAAACAGTCAAGACATTAGGGAAATCAATGATCCTTCCCGATGTTCGAAGCTTTCCCGAAGAATTGCATCTCTCGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAAAAGAAAATCCGATACTCATGCCGTAAAGAGGTAGCCCAGAGGATGCATCGTAAGAATGGACAATTTGCATCACTGAAGGAGGATTACAAATCTCATGCTGAAAATTGGGATTCAAGCAATGGTACTCCTGACCCAGAATATAATGAACGTAGATGCCAACATTGTGGAATTAGTGAGAAGTCTACTCCAGCCATGCGTCGGGGACCAGCAGGTCCAAGATCACTATGCAATGCCTGTGGACTTATGTGGGCTAATAAGGGAACTTTGAGAGATCTGACCAAAGCAGGAAGGATTGCTTTTGAACAAAATGAACTGAGAAGCAATTTGAACTTTCGCATATTCGGCTCTCTCGCAGAGGATACTTCAGCTGATATAAAGCCTTCAAAAGCAGAAGCAGAACATTCTTGTGCCAAGCAGGACAAAGAGGGAAGCCCTCATGAAACAAAGCCTGTGCAAATGGATTCCAGACGGTCACCCGAGAAAACAAATGAGCAGTTTATCGTCGGAACTGCTGAATCAGTTACTGACAACTTGCCCATCCAAGTGGAGAATCATGCTCTTAGTCTGCATGGGCAGGATACTACTCTTGAGGATCTTGCTGATGCTTCTGGGACCGAGTTTGAGATTCCCGCAGGTTTTGATGAACAGGTTGACATCGATGATTCCAACATGAGGACATATTGGCTGTGA 1083 0.4552 MDMVNNRCQNGEEPQVDVLSYANGSDEGEEAATCPPVHASSVLHTRTSELTISFEGEVYVFPAVTPQKVQAVLLLLGGQEMPNTVPTSNFLLQQNSQDIREINDPSRCSKLSRRIASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASLKEDYKSHAENWDSSNGTPDPEYNERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLTKAGRIAFEQNELRSNLNFRIFGSLAEDTSADIKPSKAEAEHSCAKQDKEGSPHETKPVQMDSRRSPEKTNEQFIVGTAESVTDNLPIQVENHALSLHGQDTTLEDLADASGTEFEIPAGFDEQVDIDDSNMRTYWL* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2198 360 MobiDBLite consensus disorder prediction 255 292 - -
Pvu2g2198 360 SMART GATA_3 177 230 IPR000679 GO:0006355|GO:0043565
Pvu2g2198 360 ProSiteProfiles GATA-type zinc finger domain profile. 177 234 IPR000679 GO:0006355|GO:0043565
Pvu2g2198 360 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 180 234 - -
Pvu2g2198 360 Pfam GATA zinc finger 183 219 IPR000679 GO:0006355|GO:0043565
Pvu2g2198 360 CDD ZnF_GATA 182 225 IPR000679 GO:0006355|GO:0043565
Pvu2g2198 360 MobiDBLite consensus disorder prediction 254 294 - -
Pvu2g2198 360 Pfam tify domain 47 77 IPR010399 -
Pvu2g2198 360 Pfam CCT motif 114 155 IPR010402 GO:0005515
Pvu2g2198 360 SMART tify_2 43 78 IPR010399 -
Pvu2g2198 360 ProSiteProfiles Tify domain profile. 43 78 IPR010399 -
Pvu2g2198 360 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 37 351 - -
Pvu2g2198 360 ProSitePatterns GATA-type zinc finger domain. 183 210 IPR000679 GO:0006355|GO:0043565
Pvu2g2198 360 Gene3D - 175 235 IPR013088 GO:0006355|GO:0008270
Pvu2g2198 360 PANTHER GATA TRANSCRIPTION FACTOR 28 37 351 IPR045280 GO:0006355
Pvu2g2198 360 ProSiteProfiles CCT domain profile. 114 156 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2198 Pvu-Chr2 37580444 37587593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2198 22 226 Tify Gene Family AT1G51600 50.901 6.34e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu2g2198 CCT 4.3e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2198 - - gmx:102669848 558.14