Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2184 ATGACTAGAAAGAGGATACAGATCAAGAAAATCGACAACATCAGTTCCAGGCAGGTGACTTTCTCCAAGAGAAGAAAAGGGCTTTTCAAGAAGGCTCAGGAGTTATCAACCCTTTGTGATGCAGACATAGCTCTCATAGTCTTTTCTGCAACTAGCAAGCTTTTTGATTATGCCAGTTCAAGTATGCAACAAGTAATTGAAAGGCTGGATCGCCATTCAGCAATGCATAGATCGGATCGTAGCTATATGGAGCTGCAGGTTAGTTTTAGTAACATCAACCTGCTATTGTAG 291 0.4124 MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFDYASSSMQQVIERLDRHSAMHRSDRSYMELQVSFSNINLLL* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2184 96 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pvu2g2184 96 Gene3D - 14 90 IPR036879 GO:0003677|GO:0046983
Pvu2g2184 96 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Pvu2g2184 96 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu2g2184 96 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu2g2184 96 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu2g2184 96 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu2g2184 96 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pvu2g2184 96 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 90 - -
Pvu2g2184 96 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Pvu2g2184 96 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu2g2184 96 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2184 Pvu-Chr2 37451699 37453782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2184 1 87 MADS-box Gene Family AT2G22540 60.227 1.28e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu2g2184 SRF-TF 7.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2184 - - pvu:PHAVU_002G212400g 184.496
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2184 2 37451699 37453782 Pvu6g2095 6 30647668 30653064 PCT