Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2176 ATGGAGCTGTATCACAGAAAATTGAAGCCAGATGAACCTCCAGTTCCTCCTAATGATTCGTATGGAAGTCCCAACACCCACCCAAAAACCACATACTTGATCATCTGTTTTTCCGTTGCAGCCGCCGTTTTTGTTGTCCTCTGCTCCTACGCCATCTATGTCAAGTTTTTCTCTCCTAGGAACAGGTCTGTGAGGAGAACCTTGTCACGGCCTCAAACTGAGGAAGATTTCTTAGACGAGGAAGAACATGGCCCTGTGGTTGACCACCCCATCTGGTACATCCGCACCACTGGCCTCCAACAATCAGTGATCGGTGCCATCACCGTTTGCAAGTACAAGAAAGATGAAGGCTTGATTGAAGGGTCGGAATGTTCCGTCTGTTTGAGTGAGTTTGAAGAGGATGAGAGTCTCAGGCTTTTGCCAAAGTGTAACCACGCTTTTCACTTGCCTTGCATTGACACCTGGCTTAGATCGCACACCAATTGCCCCATGTGCCGTGCTCCTATTGTTACTGACCCCACAAGGGTTCCATCCATGGACCCCAATGCTTTTGGTTCCAGGTCTTTTGTGGAGATGGAGGTTTTGGAAAGTGGTGGTGGAGCTCAAGCTCAAGCCCAACATGGTGATGATTTGTTGAGGGGTGAGGTAGAGGAAGAAGTTGAAGTGTGTGAAACTGAGAACTCGGCTACAGAAGTGGTGCCTGTGCAGCCAAGAAGATCAGTGTCTCTGGATTCTTCTTCTGCTGCTAAGATCAGTCTTGCTCTTGTAACTGTTGTGTCAGGAGATTCCCATGGGAATAGTTCAAAGAGGGTTAAAGGTAGTTCTTCTTCTTCTTCATCATCCACTAGTTCCATCAAGAGGTCACGATCCTTCAATGCCAAACATTTAATATCATGGTATAGCCGCAGCCAGAGAAAGCCAAACGCTCCATTGAGAAGCTTCTGA 945 0.4741 MELYHRKLKPDEPPVPPNDSYGSPNTHPKTTYLIICFSVAAAVFVVLCSYAIYVKFFSPRNRSVRRTLSRPQTEEDFLDEEEHGPVVDHPIWYIRTTGLQQSVIGAITVCKYKKDEGLIEGSECSVCLSEFEEDESLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTDPTRVPSMDPNAFGSRSFVEMEVLESGGGAQAQAQHGDDLLRGEVEEEVEVCETENSATEVVPVQPRRSVSLDSSSAAKISLALVTVVSGDSHGNSSKRVKGSSSSSSSSTSSIKRSRSFNAKHLISWYSRSQRKPNAPLRSF* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2176 314 SUPERFAMILY RING/U-box 115 173 - -
Pvu2g2176 314 SMART ring_2 124 165 IPR001841 -
Pvu2g2176 314 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 304 IPR044675 -
Pvu2g2176 314 PANTHER RING-H2 FINGER PROTEIN ATL54 13 304 - -
Pvu2g2176 314 MobiDBLite consensus disorder prediction 262 288 - -
Pvu2g2176 314 Pfam Ring finger domain 123 166 IPR001841 -
Pvu2g2176 314 MobiDBLite consensus disorder prediction 1 23 - -
Pvu2g2176 314 CDD RING-H2_PA-TM-RING 123 166 - -
Pvu2g2176 314 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Pvu2g2176 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 173 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2176 Pvu-Chr2 37215390 37216367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2176 39 221 C3H Transcription Factor Family AT1G72220 47.312 1.77e-50 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2176 - - vun:114177727 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2176 2 37215390 37216367 Pvu2g2176 2 37215390 37216367 ECH