Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2163 ATGGAAAACGACGACGTTGAAATGCTCGGTTCAGACAGCAACGAAGCTGGCTTGGAGTTGGATGGCATGAAGAAGCGCTTGAAGGAAATGGAAGACGAAGCTTCTGCTTTGCGGGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGATCTGTTCAAGCTCCTGCTCCTGCTGCTTCGAGTCAGAACAATAAAGAGGAAGTAGATTCTCGATCAGTCTTTGTCGGCAATGTGGACTATTCATGTACTCCAGAAGAAGTGCAGCAGCATTTCCAGTCATGTGGAACCGTAAACCGAGTCACCATCCGAACTGATAAGTTTGGCCAACCAAAGGGCTATGCTTACATAGAGTTTCTTGAAGTGCAGGCTGTTCAAGAAGCTCTGTTGCTGAATGAATCTGAACTACACGGGCGTCAATTGAAGGTTACTGCTAAGAGGACCAACATACCAGGGATGAAGCAATATCGTCCTCGCCGGCCTAATCCTTACCAGGGGTTTCGAGGCAGAGCCCCGTATGCACCTCCTTTTGCTTATGCTCCTTTTGGATATGGAAAAGTTCCAAGGTTTAGAATGGGGATGCGCTATAGCCCCTACTATTGA 597 0.4807 MENDDVEMLGSDSNEAGLELDGMKKRLKEMEDEASALREMQAKVEKEMGSVQAPAPAASSQNNKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYIEFLEVQAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNPYQGFRGRAPYAPPFAYAPFGYGKVPRFRMGMRYSPYY* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2163 198 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 140 IPR000504 GO:0003723
Pvu2g2163 198 MobiDBLite consensus disorder prediction 30 45 - -
Pvu2g2163 198 CDD RRM_II_PABPs 71 142 - -
Pvu2g2163 198 MobiDBLite consensus disorder prediction 30 67 - -
Pvu2g2163 198 Gene3D - 13 143 IPR012677 -
Pvu2g2163 198 Coils Coil 13 47 - -
Pvu2g2163 198 MobiDBLite consensus disorder prediction 1 20 - -
Pvu2g2163 198 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 146 IPR000504 GO:0003723
Pvu2g2163 198 SMART rrm1_1 71 142 IPR000504 GO:0003723
Pvu2g2163 198 SUPERFAMILY RNA-binding domain, RBD 56 168 IPR035979 GO:0003676
Pvu2g2163 198 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 9 195 - -
Pvu2g2163 198 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 9 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2163 Pvu-Chr2 37050666 37056070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2163 71 197 Eukaryotic Initiation Factors Gene Family AT2G36660 24.806 2.46e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2163 K14396 - gmx:100791351 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2163 2 37050666 37056070 Pvu6g2123 6 30807497 30812151 PCT