Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2144 ATGTCTCACTTCGGACGCTCTGGTCCCCCTGACATTTCCGACACTTACTCTCTTCTCGTTCTCAACATCACCTTCCGTACCACTGCCGATGACCTATTCCCTCTCTTCGACAAGTATGGGAAGGTCGTCGACATCTTCATCCCCAAGGATCGAAGGACCGGTGAGTCGAGGGGTTTTGCCTTTGTGCGTTACAAGTATGCTGACGAGGCTCAAAAGGCCGTTGAAAGGCTCGACGGAAGAATGGTTGATGGTCGGGAAATAACGGTCCAGTTTGCGAAGTATGGGCCTAATGCTGAGAGGATTCACAAAGGAAGGATTATTGAGACAGCCCAGAGATCAAGGTACCGGTCACGAAGCCGTAGTCCCAAGAAAAGGTATCGTGATGATCACAGAGACCGGGATTATAAGAAGAGAAGTCGCAGTAGAAGCTATGATAGGTATGAACGTGACAGGCACCGTGGGAAAGACAGGGATTATCGTCACAGAAGCAGGAGCCGTAGTACCAGTCTTGATTACAAGGGTCGTGGGAGGGCACGCTATGATGATGAGCGTCATAGTAGAAGCCGGAGCAGATCAGTTGATAGTCGTTCCCCTGCACGACGCAGTCCTAGTCCTCGGAAGAGTCCTTCCCCGCAGCGCAGTGCTTCCCCCCAAAGGAGTACATCCCCTAGGAAAAGCCCACGTGGTGAAAGTCCAGCAAATCGTAGCCGTGATGGACGATCACCTTCCCCGCGCAGTGTATCACCACGTGGTCGCCCTGAAGCTTCACGAAGCCCTTCTCCTCGAAATTCAAATGGTGATGAGTAA 807 0.5204 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVERLDGRMVDGREITVQFAKYGPNAERIHKGRIIETAQRSRYRSRSRSPKKRYRDDHRDRDYKKRSRSRSYDRYERDRHRGKDRDYRHRSRSRSTSLDYKGRGRARYDDERHSRSRSRSVDSRSPARRSPSPRKSPSPQRSASPQRSTSPRKSPRGESPANRSRDGRSPSPRSVSPRGRPEASRSPSPRNSNGDE* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2144 268 MobiDBLite consensus disorder prediction 102 268 - -
Pvu2g2144 268 MobiDBLite consensus disorder prediction 197 229 - -
Pvu2g2144 268 MobiDBLite consensus disorder prediction 125 196 - -
Pvu2g2144 268 Gene3D - 4 103 IPR012677 -
Pvu2g2144 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Pvu2g2144 268 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 268 - -
Pvu2g2144 268 SMART rrm2_1 17 90 IPR003954 GO:0003676
Pvu2g2144 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Pvu2g2144 268 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 268 - -
Pvu2g2144 268 SUPERFAMILY RNA-binding domain, RBD 8 100 IPR035979 GO:0003676
Pvu2g2144 268 SMART rrm1_1 17 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2144 Pvu-Chr2 36859261 36863424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2144 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 9.44e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2144 K12891 - gmx:100778928 358.221