Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2121 ATGGCAGATAACAATGTCAACCTCCCACCCGGCTTTCACTTTTATCCCACAGATGAAGAGCTTGTCGTTCATTTCCTTCAAAGAAAGGCAAATCTTCTACCTTGCCATCCAGATGTCATCCCTGATCTTGAACTCTACCCATATGATCCTTGGGAACTTCATGGTAGAGCTTTGGCAGAGGGAAAGCAATGGTACTACTACAGCAGGAGGACACAAAATAGGGTCACTGGCAATGGTTATTGGATGCCAATGGGAATGGAAGAGCCAGTGATTACAAGCTCAAGCAACAAGAGAGTTGGCATGAAGAAATATTATGTTTTCCATGTAGGAGAAGCCCCTGATGGTAACACCACCAATTGGATAATGCAAGAGTATCGTCTATTAGATTCTGCTTCCTCTAGCAGATCATCCAGAAGAAGACCACAACCAAAACCGGACCATAGTAAATGGGTGATATGTCGAGTTTATGAGCGGGATAACGATGATGATGATGGTGATGGACCAGAGCTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGAGGAAATAAGTTTGCCAAATTAA 573 0.4293 MADNNVNLPPGFHFYPTDEELVVHFLQRKANLLPCHPDVIPDLELYPYDPWELHGRALAEGKQWYYYSRRTQNRVTGNGYWMPMGMEEPVITSSSNKRVGMKKYYVFHVGEAPDGNTTNWIMQEYRLLDSASSSRSSRRRPQPKPDHSKWVICRVYERDNDDDDGDGPELSCLDEVFLSLDDLEEISLPN* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2121 190 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Pvu2g2121 190 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 5 187 - -
Pvu2g2121 190 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Pvu2g2121 190 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Pvu2g2121 190 PANTHER NAC TRANSCRIPTION FACTOR 56 5 187 - -
Pvu2g2121 190 Gene3D NAC domain 17 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2121 Pvu-Chr2 36609473 36610869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2121 6 160 NAC Transcription Factor Family AT1G52890 44.172 3.87e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu2g2121 NAM 1.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2121 - - gmx:100788893 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2121 2 36609473 36610869 Pvu2g2121 2 36609473 36610869 ECH
Pvu2g2121 2 36609473 36610869 Pvu6g2158 6 31067595 31069219 PCT