LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu2g2112	ATGTCTGATTCGGAAGAGTATCGTTGCTTCATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAATTAAAGGATACATTTGAAAAGTTTGGCAAGCTTGTTGAGGCAAAGGTTGTTGTTGACAAGTTCTCTGGGCGTTCTCGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGAGGCTATTGATGCTATGAATGGGATGGATTTAGATGGGCGAACTATTACTGTTGATAGAGCCCAGCCCCAACAAGGATCAACTAGAGATGATGGTGATCGCTACAGGGAGCGTGGTCGTGACCGTGATCGTAACCGAGATTATGGAGGTGGAGGGGGCCGAGGATCTAATGGTGGTGAATGCTTTAAGTGTGGAAAACCTGGTCATTTTGCTAGGGAATGCCCTGGTGAAGGGTCCAGGGGTGGAAGGTATGGTGGTAGGGAAAGTAGATATGGTGGAGGCAGTGGTGGTGGTCACTATGGTCCAGATAGAAATGCAGATCGCTCTTCAGGGGGGCGCAGCAGGGATGGTGGTAGTCATGGAGATTCTGGAAATGATCGACATTACCGTGATCGCGCAGGACCGTATGAGCGAGAGCGACGGGGATCAGGAGGCTTTCGTTGA	630	0.4857	MSDSEEYRCFIGGLAWSTSDRKLKDTFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIDAMNGMDLDGRTITVDRAQPQQGSTRDDGDRYRERGRDRDRNRDYGGGGGRGSNGGECFKCGKPGHFARECPGEGSRGGRYGGRESRYGGGSGGGHYGPDRNADRSSGGRSRDGGSHGDSGNDRHYRDRAGPYERERRGSGGFR*	210

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu2g2112	209	SMART	c2hcfinal6	122	138	IPR001878	GO:0003676\|GO:0008270
	Pvu2g2112	209	MobiDBLite	consensus disorder prediction	168	209	-	-
	Pvu2g2112	209	SUPERFAMILY	RNA-binding domain, RBD	4	117	IPR035979	GO:0003676
	Pvu2g2112	209	MobiDBLite	consensus disorder prediction	76	209	-	-
	Pvu2g2112	209	PANTHER	TRANSFORMER-2-RELATED	1	169	-	-
	Pvu2g2112	209	PANTHER	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	1	169	-	-
	Pvu2g2112	209	Pfam	Zinc knuckle	122	137	IPR001878	GO:0003676\|GO:0008270
	Pvu2g2112	209	SUPERFAMILY	Retrovirus zinc finger-like domains	114	141	IPR036875	GO:0003676\|GO:0008270
	Pvu2g2112	209	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	7	85	IPR000504	GO:0003723
	Pvu2g2112	209	Gene3D	-	118	177	-	-
	Pvu2g2112	209	SMART	rrm1_1	8	81	IPR000504	GO:0003723
	Pvu2g2112	209	Gene3D	-	2	117	IPR012677	-
	Pvu2g2112	209	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	10	79	IPR000504	GO:0003723
	Pvu2g2112	209	MobiDBLite	consensus disorder prediction	88	111	-	-
	Pvu2g2112	209	ProSiteProfiles	Zinc finger CCHC-type profile.	123	137	IPR001878	GO:0003676\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu2g2112	Pvu-Chr2	36547129	36550175	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu2g2112	10	93	Eukaryotic Initiation Factors Gene Family	AT1G22760	35.714	1.55e-10	58.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu2g2112	-		-	gmx:100815224	293.508