Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2068 ATGGTGAAAATTTCAGTTGGTGGGTATGATGATGGAGAAGGACCCAGCAACCGCAACCAGAAGCGACGCAGGGAAGAGGAGGAAGAAGAAGAAGAACGAAACTCGCGACGAAGCTTCGAAATTGTAGACCGTTCAATTGAACTTCAAGAGCGTGAAGATCATCATCCTGCTCCACCCAATCGTGGTACCCCAAATGGGTCTGCAAGCAATGCCACCAGAGTTAGGTCCATTCCAATATTCGTTTCAGACCCTGATGTCCTCGATTGCTGCATTTGCTATGAACCCTTGAGTGCCCCTGTCTTCCAGTGCGAGAATGGACATATTGCTTGCTCTAATTGCTGTGTCAGACTCAATAACAAGTGTCCCATGTGTTTGATGCCCATTGGGTATAACCGTTGTCGGGCTATTGAGAAGGTGTTGGAATCTATTAAAATGTCATGCCCGAATGCAAATTATGGCTGCACTGAGACATTTTGTTACAGCAAGAAAAACGACCACGAGAAGGAATGCATCTATCTACCATGTTTATGCCCACATACTGGTTGTGATTTTGTTGCCTCGTCCAAGGAGTTATTCCTCCACGTCAGCCACAGACATGTAGACTCTGGAACACAGTTTACATACGATAAATTTTTCACAGTCATCTTCAGTGCTGACCAGAAAACAATTGTTCTTCAAGAGAAAAATGATAGTAATCTATTTATTGTTCACAATAACCATGAGACTCTGGGACATAAAGTCCGCATTAGTTGCATTGGTCCCAAGTCTATGGGAGAGTTTCAGTATGAAGTTTTGGCTAGGTTTCGAGGAAGCACTCTAATACTGCAATCTTTTACCAAGATCATTCAAGGACAATACGCTGATGCTCCTTCAAATGCGTTCCTTTTGATTCCTTCTGGTTTTTTTGGCCCTCTACAACTGAAACTGGACATTCGCATTAAGTCACATTAA 951 0.4322 MVKISVGGYDDGEGPSNRNQKRRREEEEEEEERNSRRSFEIVDRSIELQEREDHHPAPPNRGTPNGSASNATRVRSIPIFVSDPDVLDCCICYEPLSAPVFQCENGHIACSNCCVRLNNKCPMCLMPIGYNRCRAIEKVLESIKMSCPNANYGCTETFCYSKKNDHEKECIYLPCLCPHTGCDFVASSKELFLHVSHRHVDSGTQFTYDKFFTVIFSADQKTIVLQEKNDSNLFIVHNNHETLGHKVRISCIGPKSMGEFQYEVLARFRGSTLILQSFTKIIQGQYADAPSNAFLLIPSGFFGPLQLKLDIRIKSH* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2068 316 Coils Coil 17 37 - -
Pvu2g2068 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 195 IPR013083 -
Pvu2g2068 316 ProSiteProfiles Zinc finger SIAH-type profile. 142 200 IPR013010 GO:0008270
Pvu2g2068 316 SUPERFAMILY RING/U-box 88 131 - -
Pvu2g2068 316 MobiDBLite consensus disorder prediction 1 70 - -
Pvu2g2068 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 14 315 IPR044286 -
Pvu2g2068 316 SUPERFAMILY TRAF domain-like 142 313 - -
Pvu2g2068 316 MobiDBLite consensus disorder prediction 15 58 - -
Pvu2g2068 316 ProSiteProfiles Zinc finger RING-type profile. 89 124 IPR001841 -
Pvu2g2068 316 CDD RING-HC_SIAHs 87 124 - -
Pvu2g2068 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 14 315 - -
Pvu2g2068 316 Pfam Seven in absentia protein family 132 246 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2068 85 199 C3H Transcription Factor Family AT2G41980 36.752 5.99e-20 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2068 K04506 - gmx:100778869 498.049