Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2004 ATGGTGAAAAAGGCAAAAGGGTCTCACTCTACTTCTTCGGCCTCTGCCTCTGCCGCTTCTGGTAAACTAGTTTTGAGGATTAAATCAAATGAGGGAATCAAGAGATCGGTGCGGCAGACCAATTCAAGAAAGAAACCCAAAGCAAAACTAAAGAAGAACAAGCAGAAGTTTGATGCTATGAAACCGAAGAAACCTCCTACAGCTTTCTTCTACTTCTTGGAGGATTTCCGTAAAGAATTTCAAGAGAAGAATCCAGATGTAAAGTCAATGCGTGATATTGGCAAGGCATGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTACGATGTAGCTACAGAAAAGCGTGCAGAATTTGATAGAGCAACGGCAGAATATAACAAGAAAATAGAAAGTGGAGAGTTTGACGAAACTGATGAGGAATCAGAGTTTGATGAGTAA 453 0.404 MVKKAKGSHSTSSASASAASGKLVLRIKSNEGIKRSVRQTNSRKKPKAKLKKNKQKFDAMKPKKPPTAFFYFLEDFRKEFQEKNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDVATEKRAEFDRATAEYNKKIESGEFDETDEESEFDE* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2004 150 MobiDBLite consensus disorder prediction 1 19 - -
Pvu2g2004 150 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 62 131 IPR009071 -
Pvu2g2004 150 Pfam HMG (high mobility group) box 62 131 IPR009071 -
Pvu2g2004 150 MobiDBLite consensus disorder prediction 1 20 - -
Pvu2g2004 150 MobiDBLite consensus disorder prediction 27 62 - -
Pvu2g2004 150 Gene3D High mobility group box domain 55 146 IPR036910 -
Pvu2g2004 150 CDD HMGB-UBF_HMG-box 62 126 - -
Pvu2g2004 150 SMART hmgende2 61 132 IPR009071 -
Pvu2g2004 150 SUPERFAMILY HMG-box 47 130 IPR036910 -
Pvu2g2004 150 PANTHER HIGH MOBILITY GROUP B PROTEIN 14 1 149 - -
Pvu2g2004 150 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 1 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2004 Pvu-Chr2 35141433 35149043 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pvu2g2004 HMG_box 5.1e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2004 - - gmx:100809401 212.616