Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2001 ATGGAAGGGAAAATGATCAAACAGAAAAAAAAACGAGAGATTAAGAAGATTGAGAATAATAGGGATCTCCTCATCACTTTCACCAAAAGAAAACGTGACATTCACAAGAAAGCCAGTGAGTTATCAACTCTTTGTGGAGCAAAAGTTGATATACTCATGCATACTTCATCTGGAAATTGGTTTAGTTATGGGGAACCTTCTCGCCAAGCGATGACAGTTTCCAAGGATAAACAAAACCCTTCAGAAGATGTCATTAATCAGCTTGTGGAGAATCAAACAAAAGTAGAGATAGATGAACTCTGTGCAAAAAATAAGACACTTACAGATCAAATGCACTATGAGGAAGAACGAGAGAAAGAACTTACAGAGATTCTCAAGACAAGAAATGCCCATGGTTGGTGGGAGGCCAAAGATCTTAATCGTGAACAAGCCAAAGAAATGAGGGCTTCTTTGATGGAACTCAAACAGAAACTGGAAAATGAACTTTCTATCAAGCGTGGGGAGAAAGATAGGTCTTCTCATCATGGTAAGCAAGGCTAG 540 0.387 MEGKMIKQKKKREIKKIENNRDLLITFTKRKRDIHKKASELSTLCGAKVDILMHTSSGNWFSYGEPSRQAMTVSKDKQNPSEDVINQLVENQTKVEIDELCAKNKTLTDQMHYEEEREKELTEILKTRNAHGWWEAKDLNREQAKEMRASLMELKQKLENELSIKRGEKDRSSHHGKQG* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2001 179 PANTHER MADS BOX PROTEIN 6 172 - -
Pvu2g2001 179 PANTHER AGAMOUS-LIKE 58-RELATED 6 172 - -
Pvu2g2001 179 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Pvu2g2001 179 Gene3D - 19 92 IPR036879 GO:0003677|GO:0046983
Pvu2g2001 179 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Pvu2g2001 179 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Pvu2g2001 179 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Pvu2g2001 179 SUPERFAMILY SRF-like 9 87 IPR036879 GO:0003677|GO:0046983
Pvu2g2001 179 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Pvu2g2001 179 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Pvu2g2001 179 MobiDBLite consensus disorder prediction 160 179 - -
Pvu2g2001 179 Coils Coil 137 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2001 Pvu-Chr2 35113294 35114589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2001 1 167 Type I MADS-box Gene Family AT1G28450 35.196 2.16e-20 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu2g2001 SRF-TF 5.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2001 - K12412 pvu:PHAVU_002G194600g 338.576