Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1987 ATGACCCGGACATTTGCCTGTTTACCATTACCAAGTCATTCAATAGACAATGAGATTAAGGACTTCAAATTTTATTATGATGCTAAGTTTGGTAGGAAGAAGGCCGACAAGAACGGCGAGACTGCTGATGAAGCGGTGGTCAGTAATGGAGGCTCGTTGGGCGTTGTGTCCAATGGCAATCCGCATGCGAAAAAGGCATCGGAAATGGCTTTTTATGAGCAGCATCGAACTGAGGGGCAGAACCAGATTCACTCAAATGGATTTTCGCCGGTTAATATGGATGAAAGACCGCAGAGATCTTTGCTTCCACCTTTTGAATCTGCAGAAATGCGAACTTTAGCAGAGAGCCTAAGTAGGGATATCATTCGTGGAAGTCCAGATGTGAAGTGGGAAAGTATCAAGGGCTTAGAGAATGCCAAACGTTTACTGAAAGAGGCTGTTGTGATGCCAATTAAGTATCCGAGGTACTTCACTGGTCTGTTGTCACCATGGAAGGGCATCCTCCTTTTTGGGCCACCAGGAACAGGAAAGACAATGCTTGCTAAGGCAGTTGCGACAGAGTGCAACACTACTTTTTTTAATATTTCCGCATCATCTGTAGTTAGCAAATGGCGAGGTGATTCGGAGAAGTTAGTGAAAGTGTTATTTGAACTTGCAAGGCATCATGCACCCTCAACAATATTTCTTGATGAAATTGATGCAATCATTAGTCAACGTGGTGAAGCTCGTAGTGAACATGAAGCAAGCAGACGGTTGAAAACTGAGCTTCTTGTTCAGATGGATGGTTTGACCCGGACTGATGAACTGGTTTTTGTCTTGGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGTATCCTTGTACCACTTCCAGAACCAGTAGCGAGGAGATCAATGTTTGAGGAACTCCTTCCTCAAAAGCCTGACGAGGAGCAGATCCCCTATGATTTACTTGTCGATCAAACAGAAGGATTTTCAGGGTCAGATATCCGATTACTCTGTAAAGAAACAGCAATGCAGCCCTTGAGACGCTTAATGTCACAACTTGAGCAGAGACAGGAGGAGGTGGTGCCTGAAGATGAGCTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAAACAGCATTGAGAAACACAAGACCATCTGCTCATCTCCATGCCCACAAATACGACAAGTTCAATGCTGATTATGGTAGTCAAATACTACAATGA 1239 0.4463 MTRTFACLPLPSHSIDNEIKDFKFYYDAKFGRKKADKNGETADEAVVSNGGSLGVVSNGNPHAKKASEMAFYEQHRTEGQNQIHSNGFSPVNMDERPQRSLLPPFESAEMRTLAESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPRYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLVQMDGLTRTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPVARRSMFEELLPQKPDEEQIPYDLLVDQTEGFSGSDIRLLCKETAMQPLRRLMSQLEQRQEEVVPEDELPKVGPIRSEDIETALRNTRPSAHLHAHKYDKFNADYGSQILQ* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1987 412 Gene3D - 299 388 - -
Pvu2g1987 412 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A-LIKE 2 ISOFORM X1 14 410 - -
Pvu2g1987 412 PANTHER AAA DOMAIN-CONTAINING 14 410 - -
Pvu2g1987 412 Gene3D - 126 402 IPR027417 -
Pvu2g1987 412 Pfam ATPase family associated with various cellular activities (AAA) 167 297 IPR003959 GO:0005524|GO:0016887
Pvu2g1987 412 CDD AAA 134 298 - -
Pvu2g1987 412 SMART AAA_5 163 300 IPR003593 -
Pvu2g1987 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 393 IPR027417 -
Pvu2g1987 412 Pfam AAA+ lid domain 325 361 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1987 Pvu-Chr2 34943734 34959213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1987 161 356 Calmodulin-binding Proteins AT3G56690 37.186 5.41e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1987 K07767 - gmx:100794098 679.093