Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1949 ATGATGGAGATGAGTATGTTGGCTCCTTCTTTCCCTGGCTTCGCAAAACCCTCTGCAAGTCTAAAACTTTCTCTTCTTACTCTCAGGGCATCTTCTCTGCGCCATGACTACCCTCTTGCGAGCAAAGTTGTTGTGAAAAATTTACCATATTCTACTGGTGAGACTACTTTGCGAAAGGAATTTTCTAATTTTGGCAAGATAGCTGAAGTTAAAATGGTTAAAGATATGAACACAAAAAGATCTAAGGGTATTGCTTTCATTCAATATACATGCCAAGATGATGCCATGCTTGCACTAGAAACCATGGATCAGAAGGATTTTTATGGTCGAACAATCTATGTGGAAATTGCTAGACTGGGTTGGGATTATTTTGGTGCAACCCCAAAGGCCTCAGGACCCCCAACCCCAAAGAAGTGGGATTCGCCAGAGCAAGAAGAAGTGGTAGATTGTTGGTACTGA 459 0.4183 MMEMSMLAPSFPGFAKPSASLKLSLLTLRASSLRHDYPLASKVVVKNLPYSTGETTLRKEFSNFGKIAEVKMVKDMNTKRSKGIAFIQYTCQDDAMLALETMDQKDFYGRTIYVEIARLGWDYFGATPKASGPPTPKKWDSPEQEEVVDCWY* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1949 152 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 112 IPR000504 GO:0003723
Pvu2g1949 152 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 21 147 - -
Pvu2g1949 152 SUPERFAMILY RNA-binding domain, RBD 33 120 IPR035979 GO:0003676
Pvu2g1949 152 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 119 IPR000504 GO:0003723
Pvu2g1949 152 SMART rrm1_1 42 115 IPR000504 GO:0003723
Pvu2g1949 152 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 21 147 - -
Pvu2g1949 152 Gene3D - 29 146 IPR012677 -
Pvu2g1949 152 CDD RRM_SF 43 115 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1949 41 122 Eukaryotic Initiation Factors Gene Family AT2G36660 35.366 4.65e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1949 - K13195 gmx:100305971 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1949 2 34517428 34519756 Pvu2g1949 2 34517428 34519756 ECH