Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1946 ATGGCTCAAACTCAGGCTGAGTCTCCCACACCTTCCTCCTTTGGCCCCATCATAAGCACACCATGTGATGAGCAAGTTGGTGGGTTCGATTGGATGGTCCTTGTGGCAGCCATTCTATGTGCCTTAGTGTGTGCTCTTGGCCTCAACACTATGTTGCAATGTGTCTTCCAATGTGCTTCTCGTCTCCTCACACAACCTGGCCAATGGATGGCTTCTCGCAGACTCAATTCTGGTCTCAAGAGGAAGGAAATGGTTGCTTTGCCAACCTCAACCTACACACACTCTGCCTCTTCATCTTCACCTTCTTCCTGTGTCATCTGCTTGGCTGAGTTCTCTGATGGAGACCCTATAAGGTTCCTCCCAAACTGCAACCACCATTTCCATGTTCTCTGCATTGACAAGTGGCTCCTCTCTCACTCTTCTTGCCCTACTTGCAGACACCTACTCAACCCAAATCATCATCATCTTCAATCCTTACATATTAATCTCATAGCTTAG 498 0.4799 MAQTQAESPTPSSFGPIISTPCDEQVGGFDWMVLVAAILCALVCALGLNTMLQCVFQCASRLLTQPGQWMASRRLNSGLKRKEMVALPTSTYTHSASSSSPSSCVICLAEFSDGDPIRFLPNCNHHFHVLCIDKWLLSHSSCPTCRHLLNPNHHHLQSLHINLIA* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1946 165 Pfam Ring finger domain 103 146 IPR001841 -
Pvu2g1946 165 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Pvu2g1946 165 SMART ring_2 104 145 IPR001841 -
Pvu2g1946 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 151 IPR013083 -
Pvu2g1946 165 PANTHER OS06G0666500 PROTEIN 20 157 - -
Pvu2g1946 165 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 20 157 - -
Pvu2g1946 165 SUPERFAMILY RING/U-box 103 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1946 Pvu-Chr2 34483858 34484499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1946 21 151 C3H Transcription Factor Family AT2G17450 43.165 6.21e-33 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1946 - K19040 gmx:100779286 227.639