Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1939 ATGGCATTGAACTCCATGGCTGCTTCTCATTCCCATTTCCCATGTGGCTCAGGCGAGCATCGACCTCCTACTCGTCATTCTGCATCAAAAGTGTGTCGAGTTTGTAGTGATCAGATTGGACATGGGGAAGATGGGAAGCTGTTTGTGGCTTGTCATGTGTGTAGTTTTCCCGTTTGCCAACCCTGCTATGAGTATGAGAGGAGTGAAGGGAACCAATGCTGCCCTCAGTGCAACACCCGCTATAAACGCCACAAAGGTTGTCCTAGAGTAGTTGGTGATGATGAGAAGCATTCTGATGCAGATGATTTTCATGATGATCCAGAAGAGAAATATGATGCTAATCATTTGGAAAATAAAGACTACAAGGAACAGCAGTGGCATCAGAAAGGTCAAGCTTTCTCTACAGCCGGAAGTGTGGCTGGTAAGGAATTTGAAGGGGAGAAGGAATTCTTCAGTAATGGAGAATGGGAAGAAAGATTAGAGCAATGGAAAGCCAGGCAAGAAAAGAGAGGTCTTCTAAACAAAGAAGAAGGCAAAGATGAGCAAGTAGAAGATGACTACGTTTTGGCAGAAGCTAGGCAACCGTTGTGGCGTAAGGTCCCAATATCTTCAAGTCTAATAAACCCATATCGCATAGTCATAATCATGAGGCTCTTTATCCTCGTTTTCTTCCTCCGTTTCCGTGTCTTAACTCCAGCATATGATGCATATCCACTGTGGCTTGCCTCTGTGATATGTGAAGTATGGTTTGCACTGTCATGGATACTTGACCAGTTCCCCAAATGGTTCCCCATCACTCGTGAAACTTACTTGGATCGCTTGTCCATGAGGTTTGAGCGTGAAGGGGAGCCAAACCTTCTAGCCCCAGTTGATGTCTATGTGAGTACTGTGGACCCTTTGAAAGAGCCTCCCATTATAACAGCAAACACTGTTCTTTCAATCCTGGCTGTTGATTACCCGGTTGAGAAGGTGTGCTGCTATGTATCTGATGATGGTGCATCTATGCTCCTTTTTGATGCACTTTCAGAAACTTCTGAATTTGCACGAAGATGGGTTCCTTTTTGCAAGAAGTATAGCATAGAGCCAAGGGCACCTGAGTTCTACTTTTCTCAGAAGATTGATTACTTGAAAGATAAGGTGCTTCCTACCTTTGTGAAGGAACGAAGGGCCATGAAGAGAGAATATGAAGAATTTAAAGTAAAAATTAATTCCTTAGTGGCAAAAGCTCAGAAGAAGCCAGAGGAGGGGTGGGTGATGCAGGATGGTACCCCTTGGCCTGGGAACAGTACTCGTGATCATCCAGGAATGATTCAGGTATATTTAGGAAGTGGTGGTGCACTGGACGTAGAAGGCAAGGAACTGCCACGGCTAGTGTATATTTCACGTGAAAAGCGTCCTGGCTATAACCACCACAAGAAAGCTGGTGCTATGAATGCTTTGGTTCGAGTTTCAGCTGTGCTTTCAAATGCACCTTTCATGCTGAATCTGGATTGTGATCATTACATAAACAATAGCAAGGCTATAAGAGAGGCCATGTGCTTTTTGATGGACCCCCAGATAGGAAAGAAGCTCTGTTATGTCCAATTTCCACAAAGATTCGATGGTATTGATCGGCATGATAGATATGCTAATCGCAATATTGTATTCTTTGATATAAATATGAAAGCCCTTGACGGGATTCAGGGTCCAGTTTACGTTGGTACTGGATGTGTGTTCAACAGGCAGGCACTATATGGATATGATCCACCAGTATCTGAGAAAAGGCCAAAGATGACTTGTGACTGCTGGCCTGCATGGTGTTGTTGTTGTTGTGGTGGTTCAAGGAAATCCAAGTCAAAGAAGAAATCAGGAGGAGGAGGGGGTCTCTTTAGTAGATTATACACCAAGAAGAAGAAAATGATGGGGAAGAACTATGTTAGAAAAGGGTCTGAGTCCTTGTTTGATCTTGAAGAGATTGAAGAAGGACTTGAAGGCTACGATGAGCTAGAGAAATCATCCCTGATGTCCCAAAAGAAATTTGAGAAGCGATTTGGGCAGTCACCAGTTTTCATTGCATCCACTTTGATAGAAAATGGTGGACTTCCTGAAGGCACCAATAGTCAATCACTAATTAAGGAAGCTATTCATGTTATAAGTTGTGGCTATGAAGAGAAGACTGAATGGGGAAAAGAGATTGGATGGATATATGGCTCAGTCACAGAAGATATTTTAACAGGGTTTAAGATGCATTGTAGAGGATGGAAATCAGTATACTGCATGCCAAAAAGAGCAGCTTTCAAAGGATCTGCCCCAATAAATCTATCAGATAGGTTACACCAAGTTCTGAGATGGGCCCTTGGTTCTGTTGAAATTTTTCTTAGTCGCCATTGTCCATTGTGGTATGGCTATGGAGGAAAACTGAAATGGCTGGAGAGGTTGGCTTATACCAATACCATTGTTTATCCATTCACTTCCCTCCCTCTACTTGCATACTGTACAATTCCAGCAGTTTGTCTTCTCACTGGAAAATTCATCATCCCAGCATTGACCAACCTTGCTAGTGTATGGTTCATGGCTCTCTTCATCTCCATCATTTTAACTGGTGTGCTTGAGCTGAGGTGGAGTGGTGTTAGCCTTGAAGACTGGTGGCGCAATGAACAATTTTGGGTGATTGGAGGTGTATCTGCTCACCTTTTTGCTGTATTCCAAGGTCTCCTTAAGGTTCTTGGAGGAGTGGACACCAATTTTACTGTCACAGCCAAAGCAGCAGATGATGCTGAATTTGGAGAGCTGTACCTGTTCAAGTGGACAACACTTCTCATCCCACCAACCACTCTTATTATCTTGAATATGGTGGGAGTTGTGGCTGGAGTCTCTGATGCCATTAACAATGGCTATGGTTCATGGGGTCCTTTGTTTGGGAAGCTATTCTTTGCCTTCTGGGTTATTGTCCACCTATATCCCTTCCTCAAAGGTCTCATGGGAAGGCAAAACAGGACTCCTACTATTGTTGTCCTTTGGTCAATTCTTCTAGCATCAATTTTCTCTTTGATTTGGGTTAGGATTGATCCTTTCTTGCCAAAACAAACTGGTCCAGTCCTCAAACAATGTGGAGTAGAATGCTAA 3105 0.4338 MALNSMAASHSHFPCGSGEHRPPTRHSASKVCRVCSDQIGHGEDGKLFVACHVCSFPVCQPCYEYERSEGNQCCPQCNTRYKRHKGCPRVVGDDEKHSDADDFHDDPEEKYDANHLENKDYKEQQWHQKGQAFSTAGSVAGKEFEGEKEFFSNGEWEERLEQWKARQEKRGLLNKEEGKDEQVEDDYVLAEARQPLWRKVPISSSLINPYRIVIIMRLFILVFFLRFRVLTPAYDAYPLWLASVICEVWFALSWILDQFPKWFPITRETYLDRLSMRFEREGEPNLLAPVDVYVSTVDPLKEPPIITANTVLSILAVDYPVEKVCCYVSDDGASMLLFDALSETSEFARRWVPFCKKYSIEPRAPEFYFSQKIDYLKDKVLPTFVKERRAMKREYEEFKVKINSLVAKAQKKPEEGWVMQDGTPWPGNSTRDHPGMIQVYLGSGGALDVEGKELPRLVYISREKRPGYNHHKKAGAMNALVRVSAVLSNAPFMLNLDCDHYINNSKAIREAMCFLMDPQIGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMKALDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPAWCCCCCGGSRKSKSKKKSGGGGGLFSRLYTKKKKMMGKNYVRKGSESLFDLEEIEEGLEGYDELEKSSLMSQKKFEKRFGQSPVFIASTLIENGGLPEGTNSQSLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSLPLLAYCTIPAVCLLTGKFIIPALTNLASVWFMALFISIILTGVLELRWSGVSLEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAADDAEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPVLKQCGVEC* 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1939 1034 SUPERFAMILY RING/U-box 18 100 - -
Pvu2g1939 1034 MobiDBLite consensus disorder prediction 1 25 - -
Pvu2g1939 1034 Pfam Zinc-binding RING-finger 23 97 IPR027934 -
Pvu2g1939 1034 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 21 109 - -
Pvu2g1939 1034 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 150 1034 - -
Pvu2g1939 1034 MobiDBLite consensus disorder prediction 88 110 - -
Pvu2g1939 1034 Pfam Cellulose synthase 290 1027 IPR005150 GO:0016020|GO:0016760|GO:0030244
Pvu2g1939 1034 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 21 109 - -
Pvu2g1939 1034 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 150 1034 - -
Pvu2g1939 1034 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 106 IPR013083 -
Pvu2g1939 1034 Coils Coil 388 408 - -
Pvu2g1939 1034 SUPERFAMILY Nucleotide-diphospho-sugar transferases 303 830 IPR029044 -
Pvu2g1939 1034 CDD mRING-HC-C4C4_CesA_plant 30 80 - -
Pvu2g1939 1034 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 407 582 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1939 Pvu-Chr2 34389354 34394716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1939 4 1034 Cell Wall Biosynthesis AT5G17420 65.189 0.0 1409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1939 K10999 - gmx:100780354 1959.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1939 2 34389354 34394716 Pvu2g1939 2 34389354 34394716 ECH