Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1932 AGAAGAAGAAAATCAAGGGATAAAGTAGATGAATGCTCACATCCGGACGAAACACGACGCCGTCAAATAGGAGAGGAGCTTGGGCTTGATGCTAAACAAGTAAAATTTTGGTTTCAGAACAAGAAAACACAATTAAGGACTAAAAGTGAGCGATTAGATATCGATGCTCTTCGTCTTGAGAATGAAAGAATACAGACAGAAAACCGTATAATGAGTGAGACTTTGAAGAGTGTAGCATGCGCACCTTGTGGGGGTCGATCCATGGGACAAGAAGAGCGAGAACTTTCTTTGCAAATCTTGAAGGTAGAAAATATTCTATTAATCAAAGAGTGTGAGAGAGTAATCTCATTCATGGCAAACAATGGGGTTGATCCACAACTACTTCCTGCTATTCCTTCTTCTTCTTCTTCTTCTTCACTTGATACCTTACGAGCAAGTTTGACGGTTGGAACTTCACAAAATCCATTCATTCTTAATGATGATCCTCACATTCCTTCCCCTGCTCAGCATAATATTCCAGCAGTTAATCAACATGTTCCTACTGCTACATCAACCCTTTCTCAGGATATTCCTATTCCTATTCCTATTCTTAATCATGGCCATAGTCGAGAAATTCCTGCTCCTGCACTTGTTCAACGTGTTTCTTCTCTTACTGCTACTTCTCCTGCCATTCTTGATCCCTTTCCCAGTCAAGATGATTCTCTTTTGATTTCATGTCTTGAGTATAATATTCCAGCTTTGGTTACTGCTCTTGATCAAAATATTCACACACTGGCTTCTACTCATAATCAAAATAACAACAACGTTCCCGCTGCTGAGGAACAAAGCCAATTGCAAGGACCAAATCCATGTTTAAGCGTTCCTTCTGTTACTCCTACCCTAGATCAAGATATTCCACCTCCTTGTCAAGACATTTCGTCCATTCTTCAGGACCATACGCCATCTCTTGATCTTGATCTGGATGGGATACTTAAAATTTTGAACAGCGATAGGGCATCCCAACCGACGAGCATCGAAAATAGAGATACGGAAAAGGCACGAATGCTGAAGATTGCGAATACTGCGATGGAAGAGTTGATGAAACTCTTAAGTATGAACGAACCCTTCTGGTTCAGGTCTATGGTGGATGAGAGATTCATTCTGCAGCGTGATTGCTACCAAAGGATATTTCAAAGGAGTAATACCTTAAACGGACCTCATGCTCGAGTAGAGTCTTCGAAAGATTCACGAGTGGTGAAAATGAGTGGGACGGAGCTTGTGGAAATGTTTTTAAATTCGGAGAAATGGGTTTATCTATTCCCAACAATTGTTAAAAAGGCCCAAACAATTGAAGTACTCGAAAGTGGTTCGTTAGGAAACCGAAATGGAGCTTTGCAGTTGATGAATGCAGAAATGCACATTCTTTCACCTTTGGTTCCAACTCGGGAATTCCACTTCCTTCGTTATTGTAAACAAATTGAAGCAGGTGTATGGACCATAGGGGATGTGTCAGTTGATTCTTCGACACACAAAACCTCTACTGTTTCCACCACTCGGAGGCTCCCATCTGGATTGTTGATTCAAGAAATCACTGAGGGATTGTGCAGGGTTTCTTGGGTGGAGCATGTGGAAGTGGATGATAAGATCCAAACTCACGATCTTTTCAGAGATCTTATTTGTGGCAATAATGCATATGGAGCAGAAAGATGGGTTTTGGCACTTGAAAGAATGTGTGAGAGGATTGCAAGTGCCTCAAGTGAAACTATACCTAGTTGTGAAGGTGGAGGAGTGATTAGGACAGCTGAGTCAAGAAGGAATATAATGCGCTTGACTCGTCGTATGGTTAAGTGTTACTGTGAGAGTTTGTGTATGAAAGATAACACGAACTTCCCACACCTAACCAGGATGAACAATTCTGGTGTTAGAGTTGCCGTTCGAGTGAACATGAGCGACCCTGGTGAACCTAAAGGCATGATTCTCAGTGCAGCTACCTCCTTTTGGCTTCCTCTCTCTCCACAACATGTTTTTGACTACTTGATAGATGACAGGAAACGAGCTAAGTGGGATGTTCTGTGCTCTGGAAACTCAGGGCACGAAATTCAACGCATCACAACAGGTAGTAATCCTGGAAACTGTATTTCAATCATGCGGCCTTTCATCCCTAAAGAGAACAACATAGTGGTTCTCCAAGAAAGTTACGTAGATGCTTTGGGATGTGTGATGTTATACGCTCCTTTTGACATGAAGGCACTGAACTACGTGATGAACGGAGATGACACATCACTGTTTCCGATTCTTCCCTCTGGTTTCACCATATCTAGGGAAGGGAAAGCAAATGTTCCTGAAGGAGAATCTGGAGAAGTTGGGAAATCAGGAGGTTCCTTGGTGACTCTAATGTTTCAAATTTTGGCTTCTAGTCCATCAAGAATGAGCATGGTAGACATCGAAGTGGTAAGTAACGTTAATGCACTTGTCACCTCAACAATAGAGAATATTAAAGATGCTTTGAATTGTTTAGATTCAAAGTAA 2508 0.4163 RRRKSRDKVDECSHPDETRRRQIGEELGLDAKQVKFWFQNKKTQLRTKSERLDIDALRLENERIQTENRIMSETLKSVACAPCGGRSMGQEERELSLQILKVENILLIKECERVISFMANNGVDPQLLPAIPSSSSSSSLDTLRASLTVGTSQNPFILNDDPHIPSPAQHNIPAVNQHVPTATSTLSQDIPIPIPILNHGHSREIPAPALVQRVSSLTATSPAILDPFPSQDDSLLISCLEYNIPALVTALDQNIHTLASTHNQNNNNVPAAEEQSQLQGPNPCLSVPSVTPTLDQDIPPPCQDISSILQDHTPSLDLDLDGILKILNSDRASQPTSIENRDTEKARMLKIANTAMEELMKLLSMNEPFWFRSMVDERFILQRDCYQRIFQRSNTLNGPHARVESSKDSRVVKMSGTELVEMFLNSEKWVYLFPTIVKKAQTIEVLESGSLGNRNGALQLMNAEMHILSPLVPTREFHFLRYCKQIEAGVWTIGDVSVDSSTHKTSTVSTTRRLPSGLLIQEITEGLCRVSWVEHVEVDDKIQTHDLFRDLICGNNAYGAERWVLALERMCERIASASSETIPSCEGGGVIRTAESRRNIMRLTRRMVKCYCESLCMKDNTNFPHLTRMNNSGVRVAVRVNMSDPGEPKGMILSAATSFWLPLSPQHVFDYLIDDRKRAKWDVLCSGNSGHEIQRITTGSNPGNCISIMRPFIPKENNIVVLQESYVDALGCVMLYAPFDMKALNYVMNGDDTSLFPILPSGFTISREGKANVPEGESGEVGKSGGSLVTLMFQILASSPSRMSMVDIEVVSNVNALVTSTIENIKDALNCLDSK* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1932 835 SMART HOX_1 2 52 IPR001356 GO:0003677
Pvu2g1932 835 CDD START_ArGLABRA2_like 345 572 - -
Pvu2g1932 835 SUPERFAMILY Bet v1-like 628 822 - -
Pvu2g1932 835 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 9 831 - -
Pvu2g1932 835 ProSiteProfiles START domain profile. 341 576 IPR002913 GO:0008289
Pvu2g1932 835 Gene3D - 349 548 IPR023393 -
Pvu2g1932 835 SUPERFAMILY Homeodomain-like 11 48 IPR009057 -
Pvu2g1932 835 Pfam Homeodomain 11 46 IPR001356 GO:0003677
Pvu2g1932 835 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 9 831 IPR042160 -
Pvu2g1932 835 SMART START_1 350 573 IPR002913 GO:0008289
Pvu2g1932 835 MobiDBLite consensus disorder prediction 262 282 - -
Pvu2g1932 835 Pfam START domain 351 573 IPR002913 GO:0008289
Pvu2g1932 835 SUPERFAMILY Bet v1-like 342 575 - -
Pvu2g1932 835 Coils Coil 42 74 - -
Pvu2g1932 835 Gene3D - 7 59 - -
Pvu2g1932 835 ProSiteProfiles 'Homeobox' domain profile. 1 48 IPR001356 GO:0003677
Pvu2g1932 835 CDD homeodomain 1 49 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1932 Pvu-Chr2 34310327 34317326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1932 312 831 Homeobox Transcription Factor Family AT1G17920 43.208 4.02e-131 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu2g1932 START 3.1e-37 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1932 K09338 - gmx:100783586 894.034