Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1919 ATGAACTGGGTTCGTGGAGACTCACTCGGCCATGGAACTTTCGCCACCGTCAACATCGTCGTCCCTGCAAACGGCTTCACTTTTTTCCCTTCTCCAGTCGCCGTCAAATCCTCTGTTTCCCACAACGCGGATTTGCTAAAAAACGAAAAGGAGATACTCTGTCGCCTTGGCTCTTCCCCTTACATCATCAACTGTTTCGGTCACGATCACACCGTCGAGAACGGCGAGGAGTTCTACAACGTCTTTCTCGAACAGGCCGCCGGAGGTTCCCTCGCCGATCAGGTCAAGAAACATGGCGGAAGCCTCCCGGAGCCTTTCGTGCGGCGATGCACAAGGTCCATCGTGGAAGGGCTGAGACATATTCACGAGCACGGTTTTGTTCACTGCGACGTGAAGCTTCAAAACGTTCTCGTTTTCCACAACGGCGAGGTGAAAATAGCAGACTTCGGGCTCGCCAAGGAGAAGGGGGAGAAACAGGGGAAGTGCGAGTGCAGGGGAACGCCGTTGTTTATGTCACCGGAATCGGTGAATGACAATGAGTATGAGCCGCCGGCAGATATTTGGGCCCTGGGATGCGCCGTGGTGGAGATGATTCGGATTGGAGTGGGAGAAGAATTACCAAAGATTCCAGAAGATTTGTCGGAAGAGGGGAAGGACTTTTTGAGAAAGTGCTTTGTTAAGGATCCCACGAAGAGGTGGAGCGCTGAGATGCTTCTCAAACACCCTTTCGTCAAAGTTGACTCATTTTCGTTTGATAAAGTTAATGAGCCGTTACCGCCGCCGTCACCAAGTACCCACTTCGATTTTCCTCACTGGGCTTCCACCGTAACGGCTTCGTTCCCGTCTTCCCCGTATTCCGACGAGTGGTCTGGGTGGTCGTGTTCGCCGGAGAGTCGTATCCGGCAGCTTGTTACCGATAAGAGACCGGAGAATTGGTCAGAATCGGATGGGTGGATGAGCGTTAGGTGA 969 0.5284 MNWVRGDSLGHGTFATVNIVVPANGFTFFPSPVAVKSSVSHNADLLKNEKEILCRLGSSPYIINCFGHDHTVENGEEFYNVFLEQAAGGSLADQVKKHGGSLPEPFVRRCTRSIVEGLRHIHEHGFVHCDVKLQNVLVFHNGEVKIADFGLAKEKGEKQGKCECRGTPLFMSPESVNDNEYEPPADIWALGCAVVEMIRIGVGEELPKIPEDLSEEGKDFLRKCFVKDPTKRWSAEMLLKHPFVKVDSFSFDKVNEPLPPPSPSTHFDFPHWASTVTASFPSSPYSDEWSGWSCSPESRIRQLVTDKRPENWSESDGWMSVR* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1919 322 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 197 279 - -
Pvu2g1919 322 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 198 - -
Pvu2g1919 322 SMART serkin_6 3 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g1919 322 SUPERFAMILY Protein kinase-like (PK-like) 3 289 IPR011009 -
Pvu2g1919 322 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Pvu2g1919 322 ProSiteProfiles Protein kinase domain profile. 3 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g1919 322 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 197 279 - -
Pvu2g1919 322 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 198 - -
Pvu2g1919 322 Gene3D Transferase(Phosphotransferase) domain 1 2 265 - -
Pvu2g1919 322 CDD STKc_MAPKKK 2 244 - -
Pvu2g1919 322 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Pvu2g1919 322 Pfam Protein kinase domain 5 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1919 Pvu-Chr2 34191325 34192350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1919 1 322 MAP Kinase Kinase Kinase AT4G36950 50.000 1.11e-106 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Pvu2g1919 Pkinase 1.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1919 - - gmx:100797177 511.146