Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1918 ATGAAACACGTTATCAGAAATGAAGGATGTAATAGAAATTATCAAAGATTTCCTTATAGGAAGACATCCAAAACAAGTGCGATTAAGACTGGTTTGAGATCATCAATTACATGCAAATATTGGATAAATGGTAATTGCATGTATGGTGATCAGTGTCGAAATTTACATTCCTGGTCTATTTCAGAGGGAACTTCTATTGATGTGAAGGAGGACAATATAATACCTTCAAGATTAATTTGGTGGACACCACCTTTTGAAGGATTTGTCAAGATTAACTGTGATGGAGCATTTACAATGCACGGAAACAAAGCAGGCGCAGGAGGGGTTGTAAGAGATTGGAGAGGAGAATTTATCTTTGGTTTCTCTAGTGGCTTGAAAAATTATTCTGTACTCATGGCTGAATTAGAGGCAATCAAGATTGGAATTGAAATAGCAATTTCCAAGGGATACAAAAACTTAATGGTTGAAAGTGATTCTAAAGTTGCCATTGATATTATTACTAGCCTTGTAGTCCAACAAAGCAATGGCGACACAAGTCAAAGTCAAAATGACATGTCTTCAATAATTGAGATAAGTAAGACGGCTAACAAGATTCATTGGAATCACGTGTTCAGGGAGGTAAACTCAGCAGCTGATGGCCTTGCAAAACATGGGTTGTCATTGTGCCCTGAGGAAGGCGTTGAAGTTTTTGAAGATCCTCCCTATTTTATTGAGAGTCATTTGTATTTAGATAGAGCTGGAAAAATATATCGTCGATGA 759 0.3689 MKHVIRNEGCNRNYQRFPYRKTSKTSAIKTGLRSSITCKYWINGNCMYGDQCRNLHSWSISEGTSIDVKEDNIIPSRLIWWTPPFEGFVKINCDGAFTMHGNKAGAGGVVRDWRGEFIFGFSSGLKNYSVLMAELEAIKIGIEIAISKGYKNLMVESDSKVAIDIITSLVVQQSNGDTSQSQNDMSSIIEISKTANKIHWNHVFREVNSAADGLAKHGLSLCPEEGVEVFEDPPYFIESHLYLDRAGKIYRR* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1918 252 Pfam Zinc finger domain 38 56 - -
Pvu2g1918 252 ProSiteProfiles Zinc finger C3H1-type profile. 32 59 IPR000571 GO:0046872
Pvu2g1918 252 SUPERFAMILY CCCH zinc finger 35 57 IPR036855 GO:0046872
Pvu2g1918 252 ProSiteProfiles RNase H type-1 domain profile. 85 220 IPR002156 GO:0003676|GO:0004523
Pvu2g1918 252 SUPERFAMILY Ribonuclease H-like 88 221 IPR012337 -
Pvu2g1918 252 CDD RNase_H_like 91 216 IPR044730 -
Pvu2g1918 252 PANTHER OS05G0353850 PROTEIN 76 248 - -
Pvu2g1918 252 Pfam Reverse transcriptase-like 92 217 IPR002156 GO:0003676|GO:0004523
Pvu2g1918 252 Gene3D - 92 220 IPR036397 GO:0003676
Pvu2g1918 252 Gene3D - 20 91 - -
Pvu2g1918 252 SMART c3hfinal6 32 58 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1918 Pvu-Chr2 34188165 34189008 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1918 54 219 Glycoside Hydrolase AT2G33160 28.571 6.41e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu2g1918 RVT_3 7.4e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1918 - - pvu:PHAVU_006G058500g 423.705