Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1916 ATGGTTACCCCACAGCCACAGCTTCAGGTTCAGCCACCACAGCCCGCGCCATCTTCGCAAGACGAGGCCTTGAAGAGGAACACCGATTGTGTCTACTTCCTTGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGTGAGTACCGCCACAGTGAGTATGCACGTGTTAATCCTAGGGATTGTCGCTATTGGTTGAGTGGCAACTGCTTGAATCCCAAATGTTCATTTCGTCATCCACCTCTTGATGGGTTGTTAGGAACACAGGCAGCAACAGCAGGTGGACCATCTGTATCTGCACCCCAATCACAGATTCCAACAGCATCTGCAACACATGCACCTTATAATTCCAGTAAACAAGCTGTCCCTTGCTTTTTCTTCCAAAAGGGGCTTTGCTTAAAAGGTGACAGATGTGCCTTCATGCATGGACCTCCTGCTCCTAGCACTGGTAATAAAGTAGCTGCTCAGGTTCCAGTTACCAGCCAAGGAGCTGAGAATCCAAGTTTTAAGAAGCCTTTTGGAACCAATGACAAGTATACTCAGGAAAGGAAAACTTCCCATGGAAATGTTGCAAAGTCAGGTGGAGGCCCTGAACTGAAACCTGCCCCAAAAATTGAATCTGCTCCTAAAAGAAATATGTTTGAATTGGAGAAGGAAATGCCACCACCCACTGTAGGATTTGATAATGAGACTTCTAGGTTTAAGACAAGTTCTCCACCAGTAACAAATGGCCCTACTGTGGTCCGGTCAAACCGTCTGCATCAAGCTCGTGTGCCAGATGATCACAATTTCCACAGTGGCAAGGATAGTGATGAGTTTCTCAGAGAATCATCTCCTGGGTTCGATGTCCTTGTAGCTGATGAACTTAGGAATTCTGATTACTACCATGGGGAGGATGAATTTGGTAAAGCAAGAGGTCAAGATGAAAGGAACCTGGACTCTTTGAATGAATATGATTTAGGGCATTCTGGTGATTATGGTTTAGCAGCTGATATTGATCGGGAAAGATTTCGCGTGCCCCAAGGTTATGAATCATATGATCACATGCAGGAACCATATGTTTGGGAGCAGCATAGGAAGGCTTCAGCCCATTTAGACAGAAGGACTCGCCGCAGATCTGACAGTCCTGAAAATGCAGAGGTCTCAGATCTCCGACATCATTTATCCAAGCGCAGAAAGGGCAATGGTTTGAAATCTGTTGTTAGTCATGATTATGCCCTTGAGGGTCATGGTGAGGAACAAAGTCATCGATCCTTTCCTCGGAAGGATTCACTACCTCTGAATGAGAGCTCCCTCGGTAATCGCTTCCGGGGTAGAATAAAAATTCCTGCAAACGGTGGCACTGATCAGCTAGAGAGGGATGACAGAGGGAGAAATAGGGGCAGGCTGTTGTCTGGAAGGTTGCAGGCCACTCAGCAGGGAAGGATCCATGATAGAATGCGAGGCAGGTTGCAAGATGATGAGAGGAGAAACTCAAAGGATCGATTGATGGGGAGAGAACTAATAGGTGGTGATTGGAGTGATTTTGCTGGGCCAAAAAGTCTTTCTGAGCTTAAAAATGGGAGGAACACTGAGAATAGGGAACTACAACCACTGGGAAAGAGAGGAACTTTAAGAGATGATCACCCACTATCTGAAGATGATCTTCAGTTTGATGGTCCAAAGCCTCTCAGTGAAATTCTGAAGGAGAAGAAGAGAGGAGGAGCTGGAGGCAGAGCTGGTGCAGACTCAGGGAATGGCAAATCGTCTGATATTAAAAATGAAGAAGTTACCAATGGCTTAGATCCTACACCGGTCACAAACACACAAAACGGTGTGCTGTCTGAGACCAAGGAATATGTCAACAATCAAAACAATGAAGAATCCAAGCTTGAGGTGAGTGATGCAGTTGGAGGAGACACTGTTGCAACTGATGGTCAATATGAGGAGGGAATGTACGATGAAGCCGGTGAAGATCAGTATTACGAAGGTGATGAACCGAGAGAAGGTGATTACGAATATGAGCAAGGTGATGATGGTTACTACGAGTATGAACAAGGTGAAGAGGGTGAAAATCAAGAGGAAGATTACGTGGATGAAGATGGGGATGATTTTGCTAAGAAGATTGGTGTCATTCATTCATAA 2121 0.4545 MVTPQPQLQVQPPQPAPSSQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCRYWLSGNCLNPKCSFRHPPLDGLLGTQAATAGGPSVSAPQSQIPTASATHAPYNSSKQAVPCFFFQKGLCLKGDRCAFMHGPPAPSTGNKVAAQVPVTSQGAENPSFKKPFGTNDKYTQERKTSHGNVAKSGGGPELKPAPKIESAPKRNMFELEKEMPPPTVGFDNETSRFKTSSPPVTNGPTVVRSNRLHQARVPDDHNFHSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKARGQDERNLDSLNEYDLGHSGDYGLAADIDRERFRVPQGYESYDHMQEPYVWEQHRKASAHLDRRTRRRSDSPENAEVSDLRHHLSKRRKGNGLKSVVSHDYALEGHGEEQSHRSFPRKDSLPLNESSLGNRFRGRIKIPANGGTDQLERDDRGRNRGRLLSGRLQATQQGRIHDRMRGRLQDDERRNSKDRLMGRELIGGDWSDFAGPKSLSELKNGRNTENRELQPLGKRGTLRDDHPLSEDDLQFDGPKPLSEILKEKKRGGAGGRAGADSGNGKSSDIKNEEVTNGLDPTPVTNTQNGVLSETKEYVNNQNNEESKLEVSDAVGGDTVATDGQYEEGMYDEAGEDQYYEGDEPREGDYEYEQGDDGYYEYEQGEEGENQEEDYVDEDGDDFAKKIGVIHS* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1916 706 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 13 706 - -
Pvu2g1916 706 MobiDBLite consensus disorder prediction 362 386 - -
Pvu2g1916 706 ProSiteProfiles Zinc finger C3H1-type profile. 55 81 IPR000571 GO:0046872
Pvu2g1916 706 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Pvu2g1916 706 SMART c3hfinal6 25 52 IPR000571 GO:0046872
Pvu2g1916 706 SMART c3hfinal6 57 80 IPR000571 GO:0046872
Pvu2g1916 706 Pfam Zinc-finger containing family 25 80 IPR041686 -
Pvu2g1916 706 MobiDBLite consensus disorder prediction 447 461 - -
Pvu2g1916 706 MobiDBLite consensus disorder prediction 92 111 - -
Pvu2g1916 706 MobiDBLite consensus disorder prediction 404 422 - -
Pvu2g1916 706 MobiDBLite consensus disorder prediction 160 174 - -
Pvu2g1916 706 MobiDBLite consensus disorder prediction 579 604 - -
Pvu2g1916 706 Gene3D - 113 189 - -
Pvu2g1916 706 Gene3D - 16 81 - -
Pvu2g1916 706 MobiDBLite consensus disorder prediction 519 569 - -
Pvu2g1916 706 MobiDBLite consensus disorder prediction 473 500 - -
Pvu2g1916 706 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 13 706 - -
Pvu2g1916 706 MobiDBLite consensus disorder prediction 362 604 - -
Pvu2g1916 706 SUPERFAMILY CCCH zinc finger 118 142 IPR036855 GO:0046872
Pvu2g1916 706 MobiDBLite consensus disorder prediction 1 22 - -
Pvu2g1916 706 MobiDBLite consensus disorder prediction 645 668 - -
Pvu2g1916 706 Pfam RNA-binding, Nab2-type zinc finger 122 142 - -
Pvu2g1916 706 ProSiteProfiles Zinc finger C3H1-type profile. 24 53 IPR000571 GO:0046872
Pvu2g1916 706 MobiDBLite consensus disorder prediction 160 205 - -
Pvu2g1916 706 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1916 Pvu-Chr2 34145676 34149668 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu2g1916 zf-CCCH_3 4.6e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1916 - - gmx:102669253 1087.4