Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1899 ATGTTAGACAACAGTGCTTCTTCTGGTGCACCATCTTCTTCTGATGCCGCCTTTGCATTATCTGAAAATGGGGTGGCTAACAAAAGGAAAAGAAGACCCGCAGGCACACCTGATCCAGATGCTGAGGTTGTGTCTCTCTCACCCACCACCTTGCTGGAATCTGACAGATATGTGTGTGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAATCTTCAAATGCACAGGAGAAGGCACAAGGTGCCATGGAAATTGCTTAAGAGGGAAACACAAGGGCAGAAGAAGAGAGTATTTGTGTGTCCAGAGCCAAGCTGTTTGCACCATGATCCTTGCCATGCCCTTGGGGATCTTGTGGGCATCAAGAAGCACTTCAGAAGGAAGCACAGCAATCACAAGCAGTGGGTCTGTGACAAGTGCTCCAAGGGCTATGCTGTTCAATCTGATTTCAAGGCACACATCAAAACCTGTGGCACCCGGGGTCATTCCTGTGACTGTGGCCGTGTCTTTTCCAGGGTGGAGAGTTTCATAGAACACCAAGATGCATGCACTGTCCGGCAGCACCGGCCAGAGTTGCAAGCACTGCAACCCGCATGCTCTTCTAGAACAGCTTCAAGCGCAAGTCCCTCTAGTGAGGCAAATTTTAGCATAGCCCCACCATTGCAAGGACTTCCACTGCCAAAACTAGCTTCTGCTGATCAACCAGCAACAGTCTTATTGACCTCAGAGATACACAATAACAAGTCCACCACCTCTCGGAACTTAGAACTTCAGCTCTTACCCTCCTCAGTAATTTCTCAAGAAAAACGAAATACGAAGGAGAACTATGGTTTGAAACTTTCAATAGGCTCATGTAGTAATGACAAAGGGAATGAAGAGAGAGTATGTTCAGAAGCACATAGGAGCCCACCTGAAAGGAATAATAATGTGAGTGACTGTTCCACATTGGAAGTGGCGAGGTTGAAAAAGTTTGCAGCTGAAGAACTCAAGTTGGCCATGGCAGAAAAGGCTTACGCAGAAGAGGCTAGGAAAGAGGCCAAACGCCAAATTGAGATAGCTGAACTTGAGTTTGAGAATGCTAAAAGGATAAGGAAACAAGCACAATCTGAACTCGCAAAGGCTGAGGTGTTGAGAAAGCAAGCCATCAAGAAGATAAGCTCCACTGTTTTGGAAATAACATGCCAAAGTTGCAAGCAACAGTTCCAGTCTTCAACTCTTGGGGTTCCATCAGAAGAGACCTCCATTGTGATGAGTTACATGTCATCAGCCACCACAGAAGGAGAAGCGGAATGA 1290 0.469 MLDNSASSGAPSSSDAAFALSENGVANKRKRRPAGTPDPDAEVVSLSPTTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDFKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQHRPELQALQPACSSRTASSASPSSEANFSIAPPLQGLPLPKLASADQPATVLLTSEIHNNKSTTSRNLELQLLPSSVISQEKRNTKENYGLKLSIGSCSNDKGNEERVCSEAHRSPPERNNNVSDCSTLEVARLKKFAAEELKLAMAEKAYAEEARKEAKRQIEIAELEFENAKRIRKQAQSELAKAEVLRKQAIKKISSTVLEITCQSCKQQFQSSTLGVPSEETSIVMSYMSSATTEGEAE* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1899 429 MobiDBLite consensus disorder prediction 1 20 - -
Pvu2g1899 429 SMART c2h2final6 57 79 IPR013087 -
Pvu2g1899 429 SMART c2h2final6 98 128 IPR013087 -
Pvu2g1899 429 SMART c2h2final6 134 161 IPR013087 -
Pvu2g1899 429 Coils Coil 328 383 - -
Pvu2g1899 429 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 1 429 - -
Pvu2g1899 429 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Pvu2g1899 429 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Pvu2g1899 429 SUPERFAMILY beta-beta-alpha zinc fingers 56 154 IPR036236 -
Pvu2g1899 429 MobiDBLite consensus disorder prediction 1 45 - -
Pvu2g1899 429 PANTHER OS03G0310200 PROTEIN 1 429 IPR039288 GO:0009630
Pvu2g1899 429 MobiDBLite consensus disorder prediction 195 216 - -
Pvu2g1899 429 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Pvu2g1899 429 Gene3D Classic Zinc Finger 35 100 - -
Pvu2g1899 429 MobiDBLite consensus disorder prediction 195 218 - -
Pvu2g1899 429 Gene3D Classic Zinc Finger 119 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1899 Pvu-Chr2 33806744 33809469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1899 22 429 C2H2 Transcription Factor Family AT2G01940 57.011 2.06e-155 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu2g1899 zf-C2H2 0.004 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1899 K25871 - gmx:100791007 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1899 2 33806744 33809469 Pvu2g1899 2 33806744 33809469 ECH