Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1898 ATGTACCTTAAAGCTAGAACCCCCACCCTTCTTTATCTCACTTGTAACAATCCAACACAACACAACACAACTCCCTTTTCTCTCCCTACCTATCTCAATCTCATTCACACCTCTTCACCAAACACACCTCTTTTCTTTGGTCTCAGAGAAGTTGTGTCATCAATGGATGAAAAAGGAAGAAGAACTACCAACACCCTTTTGAGTGAGGACGAGATGGACCTTCGAAGAGGCCCCTGGACCGTCGATGAGGACCTCACTCTCATCAATTACATTGCCACTCATGGCGAAGGTCGCTGGAACACCCTCGCCCTCTCTGCTGGGCTGAAACGAACGGGGAAGAGTTGCAGATTGAGGTGGCTCAACTACCTTCGTCCTGATGTTCGACGTGGAAACATCACGCTTGAAGAACAACTTTTGATCCTGGAACTCCATTCTCGCTGGGGAAACCGATGGTCGAAAATTGCTCAATATTTGCCTGGTAGAACGGACAATGAGATAAAGAACTATTGGAGAACTCGTGTTCAAAAGCATGCCAAACAACTCAAATGTGACGTGAACAGCAAACAATTCAAGGACACCATGCGTTACCTTTGGATGCCGAGGTTGGTGGAACGCATTCAAGCAGCTGCAACTGCCTCAGTCACCACCAACAAAGCATACACCTCTGAGAACAACCTTAAAAACAACGAAATAGAGGTTCATAATCTCAAGGATAAAATGGGATTAATCGATCCTTCAGCGATGAACAGTGACTTTGTGGGTTCCTATGTCATGCAAAGTCACACTCCAGAGAATAGTAGCACAGCTTTGTCATCATCAGACTCATTCGGGACTCAAGTCTCAACAAAATCTGATCTCACTGATTATTACAGTGTCTGA 879 0.4528 MYLKARTPTLLYLTCNNPTQHNTTPFSLPTYLNLIHTSSPNTPLFFGLREVVSSMDEKGRRTTNTLLSEDEMDLRRGPWTVDEDLTLINYIATHGEGRWNTLALSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAAATASVTTNKAYTSENNLKNNEIEVHNLKDKMGLIDPSAMNSDFVGSYVMQSHTPENSSTALSSSDSFGTQVSTKSDLTDYYSV* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1898 292 ProSiteProfiles Myb-like domain profile. 71 123 IPR001005 -
Pvu2g1898 292 PANTHER MYB TRANSCRIPTION FACTOR 55 289 - -
Pvu2g1898 292 SUPERFAMILY Homeodomain-like 73 170 IPR009057 -
Pvu2g1898 292 CDD SANT 149 172 IPR001005 -
Pvu2g1898 292 Pfam Myb-like DNA-binding domain 76 123 IPR001005 -
Pvu2g1898 292 Pfam Myb-like DNA-binding domain 129 172 IPR001005 -
Pvu2g1898 292 MobiDBLite consensus disorder prediction 263 292 - -
Pvu2g1898 292 CDD SANT 78 123 IPR001005 -
Pvu2g1898 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 124 178 IPR017930 -
Pvu2g1898 292 Gene3D - 73 129 - -
Pvu2g1898 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 123 IPR017930 -
Pvu2g1898 292 Gene3D - 133 196 - -
Pvu2g1898 292 SMART sant 128 176 IPR001005 -
Pvu2g1898 292 SMART sant 75 125 IPR001005 -
Pvu2g1898 292 ProSiteProfiles Myb-like domain profile. 124 174 IPR001005 -
Pvu2g1898 292 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 55 289 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1898 Pvu-Chr2 33797702 33800105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1898 55 292 MYB Transcription Factor Family AT3G06490 62.451 2.27e-91 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu2g1898 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1898 K09422 - gmx:778183 409.838