Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1886 ATGGGGCGTGGAAGAATACCTATGGATCTGATTGAAAAAGAGAAGGCTCGAAAGACAACATTTCAAAAGAGAAAGAACGGATTGATGAAGAAAGTTTACGAGTTTTCGACTCTTTGTTCGGTGGATGTTGGTGTAATTATCTTTGCATCAAAGTTTCTTGATGAACCTGAAATATGGCCACAAGATCCAAGAAAGTTAAAATGTGTGATCGAGAAATATCTGAACACCACCAGTGATAGGCGTCCGAAGGTGTATGATGTGGAAGAGTATTTCAGTGAAAGGATGAAAAGGATTGAAGGTGATATTTCCAAAGTGCAGAAAGGGAAGATCCAGCTCATGTACCCAACCTGGGATGACTCTTACGATGCTCTTGGAGAGGAACAGTTGAGGATGTTTGTTAGCATTCTGGATTCTAAGCTTGATGTTTGTACTCAAAGGATGAATATGTTGAAGCAAGATTCAAACGGGAAAGCAATAGTAGAATTAGTCAAAGATGAAGCAGGTGTTCCCTACATGGCCCAAAATTTAGGTAGTCATCTCAATTTCATGCAGAACATGTCTCAGACACAGGTTTTCCCTCCTAATGATAACAGCCAAGTACCATTTTATCCATTTCATCTAAGCCAAAATGTACCTTCTTTGTTTCAACTGGGCCAAAACTTTAGGCAATTGATGGAAAAAAATGGAACTGTGGATTGGGGTAATCAAGTTGGTGCAAGTGATGATCACAAAATGGGTACACAACAGGAGAATGGATCAGACAAAAACCAAAACTCCTCATCATCATGTTATTACAATGGAAATATGCAAACAATGCAGGCATATAATAATGGTGCTTTGCAAACTCTTCCTTCTCAATTGCAGTTCGATGCAACATTCCAGACCCTGTCAAATCGACCAGGTCCACCACGGGGATTTGACCCTAATGGCTATGATGATTCAAATATGCTTCAACCTCAGTTTTTAAACTATATGCACAGGAGGAAGTAG 990 0.397 MGRGRIPMDLIEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPEIWPQDPRKLKCVIEKYLNTTSDRRPKVYDVEEYFSERMKRIEGDISKVQKGKIQLMYPTWDDSYDALGEEQLRMFVSILDSKLDVCTQRMNMLKQDSNGKAIVELVKDEAGVPYMAQNLGSHLNFMQNMSQTQVFPPNDNSQVPFYPFHLSQNVPSLFQLGQNFRQLMEKNGTVDWGNQVGASDDHKMGTQQENGSDKNQNSSSSCYYNGNMQTMQAYNNGALQTLPSQLQFDATFQTLSNRPGPPRGFDPNGYDDSNMLQPQFLNYMHRRK* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1886 329 MobiDBLite consensus disorder prediction 296 316 - -
Pvu2g1886 329 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Pvu2g1886 329 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Pvu2g1886 329 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 49 IPR002100 GO:0003677|GO:0046983
Pvu2g1886 329 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu2g1886 329 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu2g1886 329 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu2g1886 329 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Pvu2g1886 329 MobiDBLite consensus disorder prediction 232 264 - -
Pvu2g1886 329 PANTHER MADS BOX PROTEIN 3 207 - -
Pvu2g1886 329 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Pvu2g1886 329 CDD MADS 2 51 - -
Pvu2g1886 329 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1886 Pvu-Chr2 33657065 33658054 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1886 1 146 Type I MADS-box Gene Family AT5G55690 37.086 1.75e-24 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu2g1886 SRF-TF 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1886 - - gmx:102660566 384.8