Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1881 ATGGACAAGGACAAGGACAAGTCTCACACTCACAGCTTTTTTCACAGTTTTGTCAAACACTTCAAATTCGGTTCTAGTAAAGAGCGAAACGATGAAGCTGACATACAGAAAATGGCTGCACAAGAGCAGAAGATTTTTCCCTACGAAACCTTGGTCGCTGTCACCAAGAATTTTAGTGCTATTCACAAGCTAGGCGAGGGAGGTTTTGGACCTGTCTACAAGGGGAAGTTGAATGATGGTAGAGAGATCGCTGTGAAGAAGTTATCACACACTTCAAATCAAGGGAAGAAAGAGTTCATGAACGAGGCGAAGCTATTGGCTCGTGTGCAGCATCGGAATGTGGTGAATTTGGTGGGCTATTGTGTCCATGGCAACGAAAAGCTCCTTGTTTACGAGTATGTTGCTCATGAAAGCCTAGACAAGTTTCTTTTCAAATCAGAAAAGAGAGAGAAGCTTGATTGGAAACGTAGGTTGGGCATAATCACAGGAGTTGCAAAAGGGTTGCTTTATCTGCACGAAGACTCACACAATTGCATCATCCATCGTGACATCAAGGCCAGTAACATCTTGCTTGATGACAAATGGACGCCCAAGATTGCAGATTTTGGCATGGCTCGTCTCTTCCCCGAAGATCAGTCCCAAGTCAACACACGTGTGGCTGGAACCAATGGATACATGGCTCCGGAATATGTTATGCATGGAAATCTATCGGTGAAGGCAGATGTATTTAGTTATGGAGTTTTGGTATTGGAGTTGATCACCGGTCAAAGAAACTCCTCTTTTAATTTGGATGTGGACGCGCAGAACATGCTTGATTGGGCATACAAGATGTACAAGAAAGGAAAGAGCTTAGAAATTGTGGATTCGACGATAGCAGGTACAATGGTAGATGAAGAGGTAGCCATGTGCATTCAGATGGGTTTGTTATGCACTCAAGGAGATCCACAGCTACGTCCCTCGATGAGGCGTGTGGTGGTGATGCTGTCGAGGAAGCCAGGGCAGATGCAAGAACCAAGCAGACCAGGAGTGCCTGGTTCTAGATACAGAAGACCTCGAAGAAACTCTGCATTGTCTTCCACATTGGGTATCTCTGGTGCCTCCGATTCACACACTTCTGATTCAAGTAATAATTATACCACTGTTACTACTAGTGCCACAGGGACCAGCTCCGCTACTGTTGAAGCAGACCCCAAAGGTAAACGTCCAATGCGGGAGGGTTAG 1221 0.4545 MDKDKDKSHTHSFFHSFVKHFKFGSSKERNDEADIQKMAAQEQKIFPYETLVAVTKNFSAIHKLGEGGFGPVYKGKLNDGREIAVKKLSHTSNQGKKEFMNEAKLLARVQHRNVVNLVGYCVHGNEKLLVYEYVAHESLDKFLFKSEKREKLDWKRRLGIITGVAKGLLYLHEDSHNCIIHRDIKASNILLDDKWTPKIADFGMARLFPEDQSQVNTRVAGTNGYMAPEYVMHGNLSVKADVFSYGVLVLELITGQRNSSFNLDVDAQNMLDWAYKMYKKGKSLEIVDSTIAGTMVDEEVAMCIQMGLLCTQGDPQLRPSMRRVVVMLSRKPGQMQEPSRPGVPGSRYRRPRRNSALSSTLGISGASDSHTSDSSNNYTTVTTSATGTSSATVEADPKGKRPMREG* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1881 406 Gene3D Transferase(Phosphotransferase) domain 1 135 339 - -
Pvu2g1881 406 Pfam Protein tyrosine and serine/threonine kinase 61 327 IPR001245 GO:0004672|GO:0006468
Pvu2g1881 406 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 381 - -
Pvu2g1881 406 CDD STKc_IRAK 64 330 - -
Pvu2g1881 406 Gene3D Phosphorylase Kinase; domain 1 19 133 - -
Pvu2g1881 406 ProSiteProfiles Protein kinase domain profile. 58 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g1881 406 SUPERFAMILY Protein kinase-like (PK-like) 43 339 IPR011009 -
Pvu2g1881 406 MobiDBLite consensus disorder prediction 332 406 - -
Pvu2g1881 406 SMART serkin_6 58 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g1881 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Pvu2g1881 406 MobiDBLite consensus disorder prediction 352 393 - -
Pvu2g1881 406 PANTHER RECEPTOR-LIKE KINASE 10 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1881 Pvu-Chr2 33591874 33595526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1881 46 342 Receptor kinase-like Gene Family AT4G11530 52.508 1.06e-109 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu2g1881 PK_Tyr_Ser-Thr 2.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1881 - - var:108347873 697.582