Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1876 ATGATGACTCCAAACTTGAACTTGGAACCCGAAAATCACTCAGAAGGAAGTAGCCAAGTGGCTTCCAATGTATCCTTGCATGAAGCATCTTATGATCTTACGAAGGGCAGCACCACCACTTCTTCGTGTCTGACAAAGGATGAAACTGATCCAGGTTCTGTTACCCTTGACTTGACACTCAACTTCAATTCCAGTGATAGTGAGTTGAAAGGTTCTAGTGATGCAAGCAGTGAAGTGGGAGCTGAAGCTCCTGCTTCAGCATCAGCAACTCCCAGGGTTTTTTCTTGTAACTACTGCAGGAGGAAGTTCTATAGTTCGCAGGCATTAGGGGGTCATCAAAATGCTCATAAAAGGGAGAGGACGATGGCTAAGCGTGCATTGAGAATGGGAATGTTCACTGAGAGATACACAAGTTTGGCATCTCTACCTCTTCATGGTTCACCTTTTAGGTCTCTTGGTCTTGAAGCTCATTCTGCAATGCACCAAAGACACGTCCCATCCTCACTGAGGACTCCTGATATGAGAACCGCTGCAAGATTTGAGAGAAACCATTTTGGATCACTGGTTTTCATGGAAGATGATGATGTTGGCTTATTTTGGCCTGGAAGTTTCAGACAGGTAGACCAAGGAGCTGGTGTTAATGAAGGACATGTTCAAAGTTCAAATGCTAGTGTGGTTCCAATAGTGCCTCCTCCACCACAAGCTTCTGCATCTCCGGATCTCACATTGAAGCTTTAA 738 0.4499 MMTPNLNLEPENHSEGSSQVASNVSLHEASYDLTKGSTTTSSCLTKDETDPGSVTLDLTLNFNSSDSELKGSSDASSEVGAEAPASASATPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRALRMGMFTERYTSLASLPLHGSPFRSLGLEAHSAMHQRHVPSSLRTPDMRTAARFERNHFGSLVFMEDDDVGLFWPGSFRQVDQGAGVNEGHVQSSNASVVPIVPPPPQASASPDLTLKL* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1876 245 PANTHER ZINC FINGER PROTEIN JAGGED 7 245 IPR045320 GO:0003700
Pvu2g1876 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Pvu2g1876 245 MobiDBLite consensus disorder prediction 1 25 - -
Pvu2g1876 245 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
Pvu2g1876 245 MobiDBLite consensus disorder prediction 223 245 - -
Pvu2g1876 245 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Pvu2g1876 245 Gene3D Classic Zinc Finger 71 140 - -
Pvu2g1876 245 MobiDBLite consensus disorder prediction 66 86 - -
Pvu2g1876 245 PANTHER ZINC FINGER PROTEIN 3-RELATED 7 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1876 Pvu-Chr2 33510457 33513973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1876 88 245 C2H2 Transcription Factor Family AT1G66140 45.161 1.36e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu2g1876 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1876 - - gmx:100775305 451.825