Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1847 ATGGATGAAAAAAATCAACAAAGTGTGCCGGTTCTACCATGGATGCGCCACCCCGTCGACGTCACTCGCTGTGAAGAACTCTCCCTCCGCAGGGTTCCTTTCCTGGACCGCCGGTTAAAGTCGGCACTAAAGAATATGGAAATCTCGAAGCTGTTCCCAGTTCAAGTCGCGCTTTGGCAAGAGATCGTTGGACTAGGTGACTTTGAGCGAGACCTTTGTGTAAACTCGCCCACAGGAAGTGGCAAAACCTTGGCCTATGCTCTTCCTATCGTGCAAAAGTTATTGCCTGCTTCCCGTGTCAAGTACCTCCGTGCTTTGGTTGTGGTTCCCACTCGTGACCTTGCCTTGCAGGTTAAACAGGTTTTTGATGCTATTGCATTGCCATTAGGCCTGTGTGTGGGCTTGGCTGTTGGTCAATCTTCCGTCACTGATGAGATTTCTAGTCTCGTTCACCTACCGGGGGATGATGAGGATTCAGATCTTGGGTTTTTCTCCCCATTCTGTTATCAAAGTAAAGTGGACATATTGGTGGCAACCCCCGGAAGGCTTGTGGACCATGTCCATTTGTCTAGGGGTTTCACATTGAAACATCTTTATTATCTTGTAGTTGATGAAGCAGATCGGTTGCTCCGGGAGGACTATCAGTCCTGGTTACCCACTGTACTTAGATCCACCCAATCTAGCAATAATGATGATGACGGTGGTGTCCCTTATTCTCCCTGGAACAGAAGAACATGTGGTAGAGTTGAGAGCGGGTTCAGGCCTCACTTTAGGCTGGCAAAGGTGCTTTTATCTGCGACATTAACTCGAGACCCAGGGAGGCTTGTTCAGCTTAATATGCATCACCCTTTATTCCTCAGCACTGGCAAAATGCGGTATAGGCTCCCAAAAAATTTGGAATCATACAAACTGATATGTGAAAGAAAGGTCAAACCCCTGTACTTGGTTGCCCTTTTGAAATCCCTGGGAGAAGAAAAATGCATAGTTTTTACAAGGTCTGTGGACTCAACACATCGTCTATGCAAATTGCTAAACTATTTTGGAGATCTGCAAATTGATATCAAGGAGTATTCTGGTCATCAACATCAACGTGTAAGAAGCAAGACACTGAATGAGTTTCGGAAAGGGCAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTAGGGGAATGGACGTAGAAGGGGTAAGAAATGTTATTAATTATGACATGCCCAAATACATAAAGACTTATGTTCATCGAGCTGGCAGGACTGCAAGAGCAGGCCAGACTGGGTGTTGCTTCACATTGATGTCAAACGATGAGGTTGGACGATTTAAGAAGTTGATGAAAAAGGCTGAGGCTAGTGCTTCTCTTGAGTATACTGTTCCATCCCGTTTGATTGAAGAACTTCATAGTACCTACCAATCAGCACTATCAAAATTGAAGGACTGTCGGAGGGAACCCAAGGATAAGTCCTGTCCAAAGATCAAAAAGAGAAGAATATAG 1488 0.4523 MDEKNQQSVPVLPWMRHPVDVTRCEELSLRRVPFLDRRLKSALKNMEISKLFPVQVALWQEIVGLGDFERDLCVNSPTGSGKTLAYALPIVQKLLPASRVKYLRALVVVPTRDLALQVKQVFDAIALPLGLCVGLAVGQSSVTDEISSLVHLPGDDEDSDLGFFSPFCYQSKVDILVATPGRLVDHVHLSRGFTLKHLYYLVVDEADRLLREDYQSWLPTVLRSTQSSNNDDDGGVPYSPWNRRTCGRVESGFRPHFRLAKVLLSATLTRDPGRLVQLNMHHPLFLSTGKMRYRLPKNLESYKLICERKVKPLYLVALLKSLGEEKCIVFTRSVDSTHRLCKLLNYFGDLQIDIKEYSGHQHQRVRSKTLNEFRKGQFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGCCFTLMSNDEVGRFKKLMKKAEASASLEYTVPSRLIEELHSTYQSALSKLKDCRREPKDKSCPKIKKRRI* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1847 495 CDD DEADc_DDX51 39 287 - -
Pvu2g1847 495 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 202 210 IPR000629 -
Pvu2g1847 495 PANTHER RNA HELICASE 28 467 - -
Pvu2g1847 495 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 28 467 - -
Pvu2g1847 495 Gene3D - 295 494 IPR027417 -
Pvu2g1847 495 Pfam DEAD/DEAH box helicase 53 272 IPR011545 GO:0003676|GO:0005524
Pvu2g1847 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 443 IPR027417 -
Pvu2g1847 495 SMART ultradead3 47 302 IPR014001 -
Pvu2g1847 495 CDD SF2_C_DEAD 299 430 - -
Pvu2g1847 495 Coils Coil 461 481 - -
Pvu2g1847 495 SMART helicmild6 338 422 IPR001650 -
Pvu2g1847 495 Pfam Helicase conserved C-terminal domain 311 422 IPR001650 -
Pvu2g1847 495 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 314 464 IPR001650 -
Pvu2g1847 495 Gene3D - 11 289 IPR027417 -
Pvu2g1847 495 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 286 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1847 Pvu-Chr2 33136678 33144297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1847 70 436 Eukaryotic Initiation Factors Gene Family AT3G19760 25.135 6.40e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1847 K14807 - gmx:100789424 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1847 2 33136678 33144297 Pvu2g1847 2 33136678 33144297 ECH