Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1828 ATGAAACTTTCATCAGCAGGTTTTAGTACTCCACCCCAGGAAGGAGAAAAGCGAGTACTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCACTTGTTTCTTTACCAGCTGTTGGAAGCCGTGTAGTATATTTTCCACAAGGTCACAGTGAACAGGTTGCTGTGTCTACCAACAGGGAAGTGGATGGCCATATACCCAATTATCCAAGCTTACCACCACAGCTTATTTGTCAACTTCATAATGTGACTATGCATGCAGATACCGAGACTGATGAAGTATATGCACAGATGACTTTACAACCTCTGAGTCCTCAAGAGCAGAAAGAGGCATACCTTCCAGCAGAGTTGGGCACTCCAAGTAAACAGCCAACAAACTACTTTTGCAAAATTCTGACTGCCAGTGACACCAGCACTCATGGGGGATTTTCTGTTCCTCGTAGGGCAGCTGAAAAAGTTTTTCCTCCTTTGGACTTTTCACAACAGCCTCCTGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAACGAATGGAAATTCAGACATATCTTCCGAGGTCAGCCCAAAAGGCATCTACTTACAACTGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGCGATTCAGTTCTGTTTATCTGGAATGAAAAGAATCAATTGCTTCTTGGCATTCGGCGTGCTAATCGTCCTCAACCTGTGATGCCGTCATCAGTCTTGTCAAGTGATAGCATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCGACTAATAGTCGTTTCACCATCTTTTATAACCCACGAGCTAGCCCATCAGAATTTGTCATACCTTTAGCAAAGTATGTTAAAGCTGTATACCATACTCGAGTTTCAGTCGGCATGCGCTTCAGGATGCTGTTTGAAACAGAGGAATCCGGTGTTCGTCGATACATGGGCACAATAACTGGCATTAGTGACCTGGATTCTGTTCGGTGGCCAAATTCCCATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACAGCAGGAGAGAGGCAACCCCGGGTGTCTCTATGGGAAATTGAGCCATTAACAACATTTCCAATGTATCCTTCTCCATTTCCCCTCAGACTCAAGAGACCATGGCCTCCAGGACTGCCTTCTTTCCATGCAGGCATGAAGGATGATGATTTTGGTATAAATTCTTCACTGATGTGGCTTCGAGACACTGAGAGAGGTCTTCCATCTCTTAATTTTCCGGGGGTTGGTGTTAGTCCTTGGATGCAGCCAAGGCTTGATCCCTCAATGATGAATTATCAAACAGACGTGTACCAAGCTATGGCTGCCGCTGCACTTCAGGATATGTGGACTTCAGATCCTTCTAAACAACATCCTACTTCCTTACTTCAATTTCAGCAACCACAGAACTTCCTGAATAGGAGTTCTCCCTTAGTGCAGACTCAAATCTTGCAGCAGTCTCAATCTCAGCAGTCTTTTCCAAATAGTCAAGAAATACCTCATCCATCTCAATCTCAGGCTCAAACTCATTTTCAGCAGCATTTGCAGCATCAGCATTCATTCAATAATCAGAATCAGCATCATCTTCTACAGCAGCAACAACAGCAGCAACAATCACAACAACCACAGCAGCAACAACAGCAACTGCAGCAGCAACAAGTGGTTGATCATCAGCAGATTTCAAATGCTGTCTCTACGATGTCTCAGTTTGTTTCAGCACCTCAATCTCAATCGCCACCCATGCAAGCTATCTCTTCACTGGGACATCAGCAGAGTTTTTCTGATTCAAACGGAAACCCTGTGACTAATGCTATTGTTTCTCCCCTGCATAGTATTTTGGGTTCATTTTCCCAGGATGAAACATCTCACCTTCTCAATCTTCCTAGAACCTCTTGGGTTCCTGTTCAACCTTCAACTGCATGGCCACCCTCCAAACGTGTTGCAGTGGATCCTCTCTTTTCTTCTGGGGCATCTCAATGTGTTCTGCCTCAAGTGGAGCAGTTAGGGCAACCACAGAGTACCATGGCTCAAAATGCAATTACATTGCCACCCTTTCCTAGTAGGGAGTGTGCTATAGAAGGAAGCACTGATCCGCAAAATCATCTTTTGTTTGGAGTAAATATAGAGCCCTCATCACTGCTAATGCATAATGGGTTGTCAAGCCTCAAGGGAGTTAGCAGTAACAGCGGCCCACCAACTATACCTTTTCAATCATCTAATTACCTGAACACCACAGGCACTGATTCTTCAATGAATCCTGGAATGACACACAATATTGGTGAAGCGGGCTTCCTGCAAACCCCAGAAAATGGAGGGCAAGGAAACCCATCGATCAAAACCTTTGTGAAGGTTTACAAGTCAGGGTCCTTTGGAAGATCATTGGATATCACAAAATTCACCAACTACCATGAGCTACGCGGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGTGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCAAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCATGGCCGGAATTTGTAAATAGTGTAGGGTGCATCAAGATACTTTCCCCTCAGGAAGTGCAGCAAATGGGCAACAATGGCCTTGAGCTTCTTAACTCAGTCCCAATTCAGAGGCTCTCTAGTGGCGTGTGTGATGACTATGCAGGCCATGAGGACCCAAGAAGTATAAGCACTGGGATAACAACTGTGGGTTCTTTAAACTACTGA 2742 0.4551 MKLSSAGFSTPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNREVDGHIPNYPSLPPQLICQLHNVTMHADTETDEVYAQMTLQPLSPQEQKEAYLPAELGTPSKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESGVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHAGMKDDDFGINSSLMWLRDTERGLPSLNFPGVGVSPWMQPRLDPSMMNYQTDVYQAMAAAALQDMWTSDPSKQHPTSLLQFQQPQNFLNRSSPLVQTQILQQSQSQQSFPNSQEIPHPSQSQAQTHFQQHLQHQHSFNNQNQHHLLQQQQQQQQSQQPQQQQQQLQQQQVVDHQQISNAVSTMSQFVSAPQSQSPPMQAISSLGHQQSFSDSNGNPVTNAIVSPLHSILGSFSQDETSHLLNLPRTSWVPVQPSTAWPPSKRVAVDPLFSSGASQCVLPQVEQLGQPQSTMAQNAITLPPFPSRECAIEGSTDPQNHLLFGVNIEPSSLLMHNGLSSLKGVSSNSGPPTIPFQSSNYLNTTGTDSSMNPGMTHNIGEAGFLQTPENGGQGNPSIKTFVKVYKSGSFGRSLDITKFTNYHELRGELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVGCIKILSPQEVQQMGNNGLELLNSVPIQRLSSGVCDDYAGHEDPRSISTGITTVGSLNY* 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1828 913 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Pvu2g1828 913 MobiDBLite consensus disorder prediction 568 597 - -
Pvu2g1828 913 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Pvu2g1828 913 SMART B3_2 127 229 IPR003340 GO:0003677
Pvu2g1828 913 Gene3D - 125 228 IPR015300 -
Pvu2g1828 913 Gene3D - 291 363 - -
Pvu2g1828 913 MobiDBLite consensus disorder prediction 482 553 - -
Pvu2g1828 913 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 893 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu2g1828 913 Gene3D - 776 869 - -
Pvu2g1828 913 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Pvu2g1828 913 PANTHER AUXIN RESPONSE FACTOR 1 893 - -
Pvu2g1828 913 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pvu2g1828 913 CDD B3_DNA 126 227 IPR003340 GO:0003677
Pvu2g1828 913 ProSiteProfiles PB1 domain profile. 780 864 IPR000270 GO:0005515
Pvu2g1828 913 SUPERFAMILY CAD & PB1 domains 778 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1828 Pvu-Chr2 32942334 32951401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1828 1 484 B3 DNA Binding Superfamily AT1G30330 84.663 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu2g1828 B3 2.2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1828 - - vun:114176727 1665.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1828 2 32942334 32951401 Pvu2g1828 2 32942334 32951401 ECH
Pvu1g2611 1 51013282 51020419 Pvu2g1828 2 32942334 32951401 PCT