Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1801 ATGGATGTTGCTGAGGTTGAAGAGAATCTATTTACTGCAACTGATGCTAAGTTACACGGACAAATGTGCAAGACTCTTTCTATTATATATTGCAAAGTATTGTCTGTATTTCCTTCTTTAGAAGCTGCTAGGCCAAGGAGTAAATCTGGTATTCAGGCATTATGTTCATTGCATGTAGCCTTGGAGAAAGTCAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGCAGATTCTGTCCTCCTAAAATTTGAGAAAGCTAAATCTGCTCTTGAAGATAGTCTTAGACGGGTGGAAGAAATTGTTCCACAATCTATTGGGTGTCAGGTTCAGGAGATTGTGAATGAGTTTGTGACAATAGAATTTGCACTTGACCCATCAGAAAAACAAGTCGGCAATGATTTGATTGCATTGCTCCAACAGGGAAGAAAGTTTAATGATTCTAGTGACAGCAATGAGCTTGAATGTTTTCACCAGGCTGCTACTGGACTTGGAATTACATCTTCAAGAGCAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAACTCCTAGAAAGGGCTCGATCAGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTCTTGCATCTTATGAGGAAATACTCCAAATTATTTAGAAGTGAATTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCACTGTTCAGGGATCTATTGGGGACAGTGTTCCTGGTAGTCATTGTCAAGCCTTTGACAGACAGCTTTCCAAATTCAGTTGCTTTAATTTCAAACCAAATAGTTGTAGGAAATCAGGGCAGATGCCTCTTCCACCTGAAGAGTTAAGGTGTCCGATATCTCTGCAACTTATGTATGATCCTGTTATTATTGCTTCTGGGCAAACATATGAAAGAGTTTGTATAGAAAAATGGTTCAGTGATGGTCACAACAAATGCCCAAAGACCCAGCAGAAACTTTCACATCTTTGTTTGACTCCTAATTACTGTGTTAAGGGCCTTGTTACTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCTCTTGACCTTAACTACTGGCAATTTTTATTATCAGAGTCTGAATCTACAAATTCAAAATCTGTAGATAGTGTCAACTCTTGCAAGTTGAAGGGTGTTGATGTGGTTTCTTTGGAAGAGAGTGGTATCCCAGAGGAATCTGTGCAAAAGGGGACTGAAAGTGTGTCTGCACAAGAGGAAGACACTGAGCAGTATTTTAACTTTCTGAAAGTTTTGACTGAGGGGAACAATTGGAGGAGGCAATGTGAAGTGGTAGAACAGTTAAGGTTGCTGCTGAGGGATGACGAGGAAGCCAGGATTTTTATGGGGGCTAATGGGTTTGTCGAAGCACTTTTGCAGTTCTTGCAATCAGCTGTCCATGAAGGTAGTGTAATGGCTGTGGAAAGTGGAACAATGGCTCTCTTCAACCTGGCTGTGGATAATAACAGAAATAAGGAAATTATGTTATCAGCTGGAGTATTATCATTGTTGGAGGAAATGATTTCTAAAACTAGTTCTTATGGTTGTACAACTGCCCTCTATTTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCAATGATTGGCATGAGTCAGGCTATCCAGTTCCTAATCCAGCTTCTCCAATCTGACTCTGATATTCAATGCAAGCAAGATGCTCTCCATGCTCTCTATAATCTTTCTACTGTGCCCTCCAATATTCAATACCTCCTTTCATCTGGCATCATTAGTGGCTTACAATTCCTTGAAGGAGACGATGATTGCATGTGGACAGAAAGATGCATAGCTGTTTTGATAAATTTAGCTACTTCTCAAGTTGGAAGGGAGGAAATTGTATCAACTCCCGGACTTGTTAGTGCACTGGCTTCTATACTGGACACCGGTGAGCTCTTGGAACAGGAGCAAGCTGTGACTTGTCTCCTAATTTTGTGCAGTAGAAGTGAGGAGTGTTGTGACATGGTCTTGCAAGAAGGGGTTATACCAGCATTGGTTTCAATATCAGTGAATGGGACCCCAAGAGGCAGAGAAAAAGCTCAGAAACTCTTGATGCTGTTCCGAGAGCAGCGACGGGACCATTCACCAGTTAAGACACATCAGTGCCCACCTGAAACTAGTGATTTGTCTATGCCTCCAGCTGAAATGAAACCACTATGCAAGTCAATTTCAAGAAGAAAGTCTGGGAGAGCTTTTAGCTTTTTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTGA 2292 0.4136 MDVAEVEENLFTATDAKLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKVKNVLQHCSECSKLYLAITADSVLLKFEKAKSALEDSLRRVEEIVPQSIGCQVQEIVNEFVTIEFALDPSEKQVGNDLIALLQQGRKFNDSSDSNELECFHQAATGLGITSSRAALAERRALKKLLERARSEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSAPCSPTVQGSIGDSVPGSHCQAFDRQLSKFSCFNFKPNSCRKSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNKCPKTQQKLSHLCLTPNYCVKGLVTSWCEQNGVPIPEGPPESLDLNYWQFLLSESESTNSKSVDSVNSCKLKGVDVVSLEESGIPEESVQKGTESVSAQEEDTEQYFNFLKVLTEGNNWRRQCEVVEQLRLLLRDDEEARIFMGANGFVEALLQFLQSAVHEGSVMAVESGTMALFNLAVDNNRNKEIMLSAGVLSLLEEMISKTSSYGCTTALYLNLSCLEEAKPMIGMSQAIQFLIQLLQSDSDIQCKQDALHALYNLSTVPSNIQYLLSSGIISGLQFLEGDDDCMWTERCIAVLINLATSQVGREEIVSTPGLVSALASILDTGELLEQEQAVTCLLILCSRSEECCDMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQRRDHSPVKTHQCPPETSDLSMPPAEMKPLCKSISRRKSGRAFSFFWKSKSYSVYQC* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1801 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
Pvu2g1801 763 Gene3D - 625 703 IPR011989 -
Pvu2g1801 763 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Pvu2g1801 763 SMART arm_5 455 499 IPR000225 GO:0005515
Pvu2g1801 763 SMART arm_5 540 581 IPR000225 GO:0005515
Pvu2g1801 763 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Pvu2g1801 763 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 755 - -
Pvu2g1801 763 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Pvu2g1801 763 Coils Coil 175 195 - -
Pvu2g1801 763 SUPERFAMILY ARM repeat 428 704 IPR016024 -
Pvu2g1801 763 Coils Coil 87 107 - -
Pvu2g1801 763 CDD RING-Ubox_PUB 284 326 IPR045210 -
Pvu2g1801 763 PANTHER U BOX DOMAIN-CONTAINING 1 755 - -
Pvu2g1801 763 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 551 594 IPR000225 GO:0005515
Pvu2g1801 763 SUPERFAMILY RING/U-box 280 355 - -
Pvu2g1801 763 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Pvu2g1801 763 Gene3D - 427 608 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1801 Pvu-Chr2 32534123 32538811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1801 1 762 U-box Gene Family AT1G24330 65.766 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1801 - - gmx:100794099 1352.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1801 2 32534123 32538811 Pvu2g1801 2 32534123 32538811 ECH
Pvu1g2686 1 51554748 51559706 Pvu2g1801 2 32534123 32538811 PCT