Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1793 ATGGTGAAGTATTCAAGGGAGCCAAACAATCCTACTAAGTCGTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTCAAGAACACTAGGGAAACTGCGTTTGCAATTAGGAAGTTGCCCTTGGTTAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAACAGGCCATTCCATTCAGACGTTTCTGTCGTGGTGTTGGAAGGACAGCCCAAGCAAAGAGTAGACACTCTAATGGCCAAGGAAGGTGGCCTGTCAAATCAGCAAAATTCATCCTTGATTTGCTTAAAAATGCCGAGAGCAATGCTGAAGTGAAAGGTTTGGATGTTGATGCGCTTTACATTTCCCATATCCAAGTCAATCAAGCGCAAAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCCTTATATGTCATCCCCGTGCCACATAGAATTGATATTGTCGGAAAAGGAAGAACCCGTAAGGAAGGAGCCCGAGACAAATTTGGCAACAAGCAAGAAGTCCCAAGCTCTACGAAGTGGTGCCTCTTCTTAG 546 0.4579 MVKYSREPNNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVRKEPETNLATSKKSQALRSGASS* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1793 181 MobiDBLite consensus disorder prediction 167 181 - -
Pvu2g1793 181 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Pvu2g1793 181 Gene3D Ribosomal protein L22/L17 1 180 IPR036394 GO:0003735|GO:0005840|GO:0006412
Pvu2g1793 181 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 1 181 - -
Pvu2g1793 181 MobiDBLite consensus disorder prediction 153 181 - -
Pvu2g1793 181 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Pvu2g1793 181 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Pvu2g1793 181 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Pvu2g1793 181 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Pvu2g1793 181 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Pvu2g1793 181 PANTHER 60S RIBOSOMAL PROTEIN L17 1 181 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1793 Pvu-Chr2 32426672 32429993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1793 1 181 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 86.188 2.67e-115 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1793 K02880 - gmx:100499784 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1793 2 32426672 32429993 Pvu2g1793 2 32426672 32429993 ECH
Pvu1g2693 1 51588666 51590665 Pvu2g1793 2 32426672 32429993 PCT