Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu2g1780 | ATGAGTTTGCTCCATGTAGTTGGGTTTGGTCTAAAAGTGGGGCATCTACTTTTGGTGCTATGTTGCTGGGTTGTGTCTGTCATTTACCTTAACTGGTTTATTAGCAGTGGAATTATGGACACCAAGATGGGGTTTCCAGGTGGTGGTGGGGGTGGAAAGATGTGGCACAAATGGTGGGAGAAGATCTCAGGGCAGGGTTGCAAAATCCATCAACAGTACTACCAGTATATTGGCTCTAAGGAAGTGAAGAGAGCGTTGTGGAGGAAGCTTTTGCTGACATGGGTGGTGGGTTGGATTATAGTATCTTTGTGGATCTTGTGCTACTTGAGCTTGCAAGGTATTGAGAAGAGGAAAGAAACTCTGGCTAGCTTGTGTGATGAAAGGGCTAGGATGCTTCAGGATCAGTTCAACGTCAGTATGAACCATATCCAAGCCATGTCAATTCTGATCTCCACCTTTCACCATGCCAAGAACCCCTCAGCCATCGATCAGAAAACTTTTGCAAGGTACACAGAAAGAACAGCTTTTGAGAGGCCTCTTACAAGTGGCGTTGCATATGCTGTAAGGGTGCTCCATTCTGAAAGGGAACAGTTTGAAAAGCAACAAGGTTGGACTATCAAGAGGATGGATACTCTAGAGCAGAACCCGGTTCATAAAGATGATTATGCCCCAGAGGCATTGGAGCCATCCCCCGTCCAGGAAGAATATGCTCCTGTCATTTTTGCACAAGATACAATTGCACATGTGATTTCTGTTAATGTGCTTTCTGGAAAGGAAGACCGTGAAAATGTGCTGCGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGCACCCTTCAGGCTGCTAAAAACAAATCGTCTAGGGGTTATCCTGACATTTGCTGTCTACAAGAGAGATCTTCCATCAAATGCAACCCCAAATGAAAGAATTCAAGCGACTGATGGGTATCTTGGGGGAGTCTTTGATGTTGAGTCATTGGTGGAGAAATTACTTCAGCAACTTGCTAGCAAGCAAACTGTAATTGTTAATGTGTATGATACTACAAATCATACTCATCCAATTGCCATGTATGGCTCAAACGAATCAGGGGATGAGTTCTATCGTGTCAGCACTCTTAATTTCGGAGACCCTTTTAGGAAGCACGAGATGCACTGTAGGTTCAAGCAGAAACCACCTTGGCCATGGTTGGCAATAACTACTTCATTTGGTATCCTAGTTATTGCATTCCTTGTTGGATATATTTTCCATGCCACTGTGAATCATATCGCCAAAGTAGAAGATGATTACGGTGAGATGATGAAACTTCGGGAACGAGCCGTGGCGGCTGATATTGCAAAATCCCAGTTTCTTGCTACTGTTTCCCACGAGATCAGAACACCAATGAACGGTGTTTTAGGGATGTTGCATATGCTTATGGACACAGATCTAGATGTAACCCAACAGGAATATGTTAGGACAGCACAGGAAAGCGGAAAGGCTCTCGTGTCACTAATAAACGAGGTTTTGGATCAAGCTAAGATTGAATTTGGTAAGCTAGAGCTTGAGGCTGTGCTTTTTGATATACGGGCAATATTGGATGATGTATTGTCACTGTTTTCTGAGAAGTCTCAAGGAAAAGGGGTAGAGTTGGCAGTTTATGTGTCAGATCAGGTTCCAGAATTTCTAATAGGTGATCCAGGAAGATTTCGACAAATAATTACCAATCTCATGGGTAACTCAATTAAGTTCACTGACAAAGGACATATTTTTATCACTGTCCATCTTGTTGAGGAGGTTGTCCATTCAATAGAGGTTGACAAAGAATCCAACTCAGAAAATACTTTGAGCGGCTCTGTTGTAGCTGATAGTCGCCGGAGCTGGGAAGGATTCAGGGCTTTCAGTCAAGAGGGACCTCTTGGTTCCTTTTCATCCCCCTCGAGTGATCTTGTCAATTTGATTGTATCTGTTGAGGATACAGGTGAAGGCATTCCTCTTGAATCTCAGCCCCGCATCTTCACACCATTCATGCAGGTAGGTCCATCCATTTCCAGAAAGCATGGAGGAACAGGTATTGGCCTAAGCATTAGCAAGTGTTTGGTTGGTCTCATGAATGGAGAAATTGGATTTGTGAGCATACCCAAGATTGGATCCACATTCACTTTTACCGCTGTATTCAGCAATGGTCTCCGCAGTTCAAACGAGTGTAAAATTCAGCAAACAAACAGCCAACCTCGGTCAGCATCTTCAGAATTTGAGGGAATGACTGCATTAATTATTGACCCAAGACCTGTTAGAGCAAAAGTGTCAAGATATCACATCCAACGGCTTGGCATTCATGTTGAGATGGTTTCTGATTTAAACCAAGGTTTGCTAACCATAAGCAATGGGAATATAGTTATTAATATGGTCTTGATTGAGCAGGAGGTTTGGGATAGAGATTTAGGTTTGTCGTCTCACTTTGTCAATAATACAAGGAAAATTGATCATGGGGTTCCCCCAAAGCTGTTCATTCTTGTTAATTCTAGTAGTTCTTTTAAAGCTAGTGTAAACTTGGGTGCTGATAATCCTACTGTCATCACCAAACCTCTGAGAGCAAGTATGCTTGCGGTCTCACTACAGCGAGCCATGGGTGTCCAAAACAAGGGAGCTCCTCGAAATAGAGAGCTCCAAAGTTTGTCTCTTCGCCATCTTCTTTGTGGCAGGAAAATTCTAATCGTAGATGACAATGCTGTGAACCGTGCTGTAGCAGCTGGTGCATTGAAAAAGTATGGAGCAGATGTGGTTTGTGTTAGCAGTGGGAAAGATGCCATCGCTTCCCTGAAGCCACCCCATCAGTTTGATGCCTGTTTCATGGATATTCAAATGCCAGAAATGGACGGTTTTGTAGCAACAAAGAAAATTAGGGAGATGGAACAAAGTGTGAACAGAGAAGTATCAATGGAGGACAATGCTACAAACTGGCATGTACCCATTTTAGCCATGACTGCAGATGTGATACAGGCTACACATGAGAAATGTCTAGGGGGTGGCATGGATGGATACGTTTCAAAACCATTTGAAGCTGAACAGCTCTATAGAGAAGTCTCACGGTTTTTCCAGTCATATTGA | 3087 | 0.4325 | MSLLHVVGFGLKVGHLLLVLCCWVVSVIYLNWFISSGIMDTKMGFPGGGGGGKMWHKWWEKISGQGCKIHQQYYQYIGSKEVKRALWRKLLLTWVVGWIIVSLWILCYLSLQGIEKRKETLASLCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQKTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPVQEEYAPVIFAQDTIAHVISVNVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDVESLVEKLLQQLASKQTVIVNVYDTTNHTHPIAMYGSNESGDEFYRVSTLNFGDPFRKHEMHCRFKQKPPWPWLAITTSFGILVIAFLVGYIFHATVNHIAKVEDDYGEMMKLRERAVAADIAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGKGVELAVYVSDQVPEFLIGDPGRFRQIITNLMGNSIKFTDKGHIFITVHLVEEVVHSIEVDKESNSENTLSGSVVADSRRSWEGFRAFSQEGPLGSFSSPSSDLVNLIVSVEDTGEGIPLESQPRIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSIPKIGSTFTFTAVFSNGLRSSNECKIQQTNSQPRSASSEFEGMTALIIDPRPVRAKVSRYHIQRLGIHVEMVSDLNQGLLTISNGNIVINMVLIEQEVWDRDLGLSSHFVNNTRKIDHGVPPKLFILVNSSSSFKASVNLGADNPTVITKPLRASMLAVSLQRAMGVQNKGAPRNRELQSLSLRHLLCGRKILIVDDNAVNRAVAAGALKKYGADVVCVSSGKDAIASLKPPHQFDACFMDIQMPEMDGFVATKKIREMEQSVNREVSMEDNATNWHVPILAMTADVIQATHEKCLGGGMDGYVSKPFEAEQLYREVSRFFQSY* | 1029 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu2g1780 | 1028 | ProSiteProfiles | Histidine kinase domain profile. | 452 | 720 | IPR005467 | - | |
Pvu2g1780 | 1028 | Gene3D | - | 414 | 508 | - | - | |
Pvu2g1780 | 1028 | CDD | REC_hyHK_CKI1_RcsC-like | 896 | 1021 | - | - | |
Pvu2g1780 | 1028 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 557 | 718 | IPR003594 | - | |
Pvu2g1780 | 1028 | ProSiteProfiles | CHASE domain profile. | 158 | 384 | IPR006189 | - | |
Pvu2g1780 | 1028 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 499 | 715 | IPR036890 | - | |
Pvu2g1780 | 1028 | SMART | REC_2 | 894 | 1021 | IPR001789 | GO:0000160 | |
Pvu2g1780 | 1028 | CDD | HisKA | 445 | 506 | IPR003661 | GO:0000155|GO:0007165 | |
Pvu2g1780 | 1028 | Gene3D | - | 890 | 1027 | - | - | |
Pvu2g1780 | 1028 | SMART | HisKA_10 | 445 | 510 | IPR003661 | GO:0000155|GO:0007165 | |
Pvu2g1780 | 1028 | Gene3D | CHASE domain | 162 | 391 | IPR042240 | - | |
Pvu2g1780 | 1028 | Gene3D | - | 110 | 161 | - | - | |
Pvu2g1780 | 1028 | ProSiteProfiles | Response regulatory domain profile. | 748 | 869 | IPR001789 | GO:0000160 | |
Pvu2g1780 | 1028 | Pfam | His Kinase A (phospho-acceptor) domain | 445 | 508 | IPR003661 | GO:0000155|GO:0007165 | |
Pvu2g1780 | 1028 | Pfam | CHASE domain | 161 | 357 | IPR006189 | - | |
Pvu2g1780 | 1028 | CDD | PRTases_typeI | 843 | 923 | IPR000836 | - | |
Pvu2g1780 | 1028 | SUPERFAMILY | CheY-like | 893 | 1025 | IPR011006 | - | |
Pvu2g1780 | 1028 | PRINTS | Bacterial sensor protein C-terminal signature | 645 | 659 | IPR004358 | GO:0016310|GO:0016772 | |
Pvu2g1780 | 1028 | PRINTS | Bacterial sensor protein C-terminal signature | 663 | 673 | IPR004358 | GO:0016310|GO:0016772 | |
Pvu2g1780 | 1028 | PRINTS | Bacterial sensor protein C-terminal signature | 680 | 698 | IPR004358 | GO:0016310|GO:0016772 | |
Pvu2g1780 | 1028 | PANTHER | HISTIDINE KINASE 3 | 57 | 1027 | - | - | |
Pvu2g1780 | 1028 | SUPERFAMILY | Homodimeric domain of signal transducing histidine kinase | 432 | 511 | IPR036097 | GO:0000155|GO:0007165 | |
Pvu2g1780 | 1028 | SUPERFAMILY | CheY-like | 744 | 870 | IPR011006 | - | |
Pvu2g1780 | 1028 | Pfam | Response regulator receiver domain | 896 | 1020 | IPR001789 | GO:0000160 | |
Pvu2g1780 | 1028 | SMART | HKATPase_4 | 557 | 720 | IPR003594 | - | |
Pvu2g1780 | 1028 | PANTHER | TWO-COMPONENT HISTIDINE KINASE | 57 | 1027 | - | - | |
Pvu2g1780 | 1028 | SMART | CHASE_2 | 158 | 359 | IPR006189 | - | |
Pvu2g1780 | 1028 | Gene3D | - | 509 | 720 | IPR036890 | - | |
Pvu2g1780 | 1028 | ProSiteProfiles | Response regulatory domain profile. | 895 | 1025 | IPR001789 | GO:0000160 | |
Pvu2g1780 | 1028 | CDD | HATPase_EvgS-ArcB-TorS-like | 562 | 718 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu2g1780 | Pvu-Chr2 | 32130970 | 32138797 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu2g1780 | 1 | 1027 | Miscellaneous Gene Families | AT1G27320 | 68.130 | 0.0 | 1412 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Others | Pvu2g1780 | CHASE | 1.9e-36 | CL0165 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu2g1780 | K14489 | - | gmx:100801546 | 1863.97 |