Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1778 ATGACACCTGGTTACGAATACGATATTAATGATCTGCATCACGAAGCTCAAGCCAGATGGCTGAAGCCTGCAGAAGTGATGTACATTTTACAGAATCATGAAAAGTTCCTGCTCACCCAAGAGCCCCCGCAACAGCCAACCAGTGGATCCTTGTTTCTGTTTAACAAAAGAGTCCTGCGTTTCTTCCGGAAAGATGGTCATAACTGGCGCAAGAAAAGAGATGGAAGAACTGTGGGAGAAGCACACGAACGACTGAAGGTTGGAAATGTTGAAGCCTTAAATTGTTATTATGCACACGGAGAGCAGAACCCTAGTTTCCAGAGGCGGAGCTATTGGATGCTGGATCCGGAATATGAGCATATTGTTCTTGTGCATTATAGAAACACAAGTGAGGGAAGACTAAGTTCTGGAGCCGGTGCACAATTGTCACCAAGTTCCTCTTCTGCATTTTGTCAGAGTCCTAGCCCATATTCTAATCAGAATCCAGGGTCAACATCCACACTTGTTGATTCATATGAACCTAATCAGAGTTTCTCCAGTTCTGGAACTACAGAAGTTACGTCTGATATATTCATTCTGAGCAATAAAATGGATCACATGGATGGAACTGATGCAGAATCAGGAACCTCATCTGAGCTTGTAGTTACTCAAGCTTTGCGCCGACTAGAGGTACAATTAAGTTTGAATGAGGACAGCTTTGAAGATATTGCTCCCTTCTGCAATAAGCACGAAGCTGCCCACGATCCAAACCTTCTACACAATCAAACGGTGATCAGCAATCAAGATCAATCTGCAGCTTTCTCTGGATCTGATGATCAAGGGCTATTTTATGATGAATATAAGGGAGGACAAGGTGATGGTGGTGAATGTTATCATGAACTAATAGACCATGGATACCCTGACGGAAATGAAAAGGCTTTATGGACAGGGGTGCTTGGATCATGCGAGTCCTCAACTTCTGTCAAGTTACCACCAAAAAATGTATACTTGACGGCTGGAAATGAAAATTCAGTATCTTTTCTGGGAAGGGTACTAGTACCAGTTTCCAACCAGGAAGAGAGTCACTGGCTCAATTTCAACAGTGATAATTCTCAAAGCTCTGTTTTCTCACCGCCTCAAGGGGTGGGTGAAGTCAAATTTCCTGCATATTCTTCTATGGTGGAAACACGAGTAACTAATTCTGACTACTATGGAACATTCTTTGACCAAAGCCAAATAGTAGCTCCTCTGGATGCAGATTCAAGCTTGACCATTGCACACAAACAGAAATTTACTATTAAGACACTCTCCCCAGAATGGGGTTATGCCACTGAGACCACTAAGGTCATCATTGTTGGGTCTTTTCTCTGTCACCCCTCAGATTCTACCTGGGCATGCATGCTTGGTGATGTTGAAGTTCCTGTTCAGATAATTCATGATGGTGTAATCTGTTGTGAAGCTCCACCTTACCTTCCCGGAAAGGTTACTCTGTGCATTACTTCTGGAAACCGGGAGTCCTGCAGTGAAGTCAGAGAGTTTGAATATCGCGACAAGACCTATAGTTGCACCCAATGTACTCAATTGAAAACAGAAGCCACTAGAAGTCCTGAAGAGCTGTTATTACTTGTTAGATTAGGGCAGATGCTTCTTTCTACATCAACAATAAAGAATGACAACATAGAATCGGGAATTCCTCTCATAAAACAGAAAGCTGATGATGACTCATGGAGCCATATTATAGAGACTCTTCTAGTTGGTGGTGGTACGTCGACTAGTACTACTGATTGGCTTCTCGAAGAACTTCTAAAGGATAAGCTTCAACAGTGGCTTTCTTACAGATCTCAGGAAAGAGATGAAGAGACAGACTGCTCTCTGTCCAAGAAAGAGCAAGGCATTATTCACATGGTTGCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCTATTCTTAGTTGTGGAGTGAATATAAATTTCCGTGACATCAGTGGGTGGACTGCCCTTCATTGGGCTGCCCGTTTCGGAAGGGAAAAAATGGTCGCTTCACTTGTAGCTTCTGGAGCATCTGCTGGAGCTGTGACAGATCCAACTGCACAAGACCCAATCGGTAAAACTGCTGCATCTATTGCAGCCAGCAATGGGAACAAGGGACTAGCAGGATATCTTTCAGAGGTAGCTGTGACAAGCCACCTATCATCACTTGTACTGGAAGAGAGTGAATTATCTAAAAGTTCTGCCCAGCTTCAGGCAGATATGACTGTTACCAGTGTCTCCAAGGAAAATCTTGCTGCCAATGAGGATCAGGCGTCACTCAAACATACCTTGGCTGCTGTCAGAAATGTAACTCAGGCAGCTGCGCGGATACAATCGGCTTTTCGGTCACATTCTTTTAGAAAACGGAGAGCAAGAGAAGGTATAAATAGTTGTGGTACGAGTGTAGGTGGCATTGGTAGCATTCAAGAAATTTCTGCTATGTCAAAACTTGCCTTTCGAAGCTCACGTGAACATAATTCAGCTGCTTTATCAATTCAGAAGAAATATCGTGGTTGGAAAGGTCGCAAAGATTTCTTATCATTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAGGTTAGGAAGCATTACAAGGTATTATGGGCAGTTGGAATCTTGGACAAGGTCGTGCTACGATGGAGAAGAAAAGGAGCTGGTTTACGAGGTTTCCGACCAGAGATGGACATTAATGAAAATGATGATGAAGATGAAGATATTCTCAAGGTGTTCCGAAAACAGAAGGTGGATGTAGAAATTGAAAAGGCTGTTTCACGGGTGATGTCCATGGTCGACTCACCAGATGCTCGTGACCAATATCGTCGCATGCTTGAGAAATATCGTCAATCTAAGGCTGAACTTGTGGCGGGTACGAGTGACGAAGTATCATCAACCACTTCTGTGGGGAATGCCTTATTTATGGAAGATGACTTATATCCATTTCCCTAG 2964 0.4356 MTPGYEYDINDLHHEAQARWLKPAEVMYILQNHEKFLLTQEPPQQPTSGSLFLFNKRVLRFFRKDGHNWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEQNPSFQRRSYWMLDPEYEHIVLVHYRNTSEGRLSSGAGAQLSPSSSSAFCQSPSPYSNQNPGSTSTLVDSYEPNQSFSSSGTTEVTSDIFILSNKMDHMDGTDAESGTSSELVVTQALRRLEVQLSLNEDSFEDIAPFCNKHEAAHDPNLLHNQTVISNQDQSAAFSGSDDQGLFYDEYKGGQGDGGECYHELIDHGYPDGNEKALWTGVLGSCESSTSVKLPPKNVYLTAGNENSVSFLGRVLVPVSNQEESHWLNFNSDNSQSSVFSPPQGVGEVKFPAYSSMVETRVTNSDYYGTFFDQSQIVAPLDADSSLTIAHKQKFTIKTLSPEWGYATETTKVIIVGSFLCHPSDSTWACMLGDVEVPVQIIHDGVICCEAPPYLPGKVTLCITSGNRESCSEVREFEYRDKTYSCTQCTQLKTEATRSPEELLLLVRLGQMLLSTSTIKNDNIESGIPLIKQKADDDSWSHIIETLLVGGGTSTSTTDWLLEELLKDKLQQWLSYRSQERDEETDCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDISGWTALHWAARFGREKMVASLVASGASAGAVTDPTAQDPIGKTAASIAASNGNKGLAGYLSEVAVTSHLSSLVLEESELSKSSAQLQADMTVTSVSKENLAANEDQASLKHTLAAVRNVTQAAARIQSAFRSHSFRKRRAREGINSCGTSVGGIGSIQEISAMSKLAFRSSREHNSAALSIQKKYRGWKGRKDFLSLRQKVVKIQAHVRGYQVRKHYKVLWAVGILDKVVLRWRRKGAGLRGFRPEMDINENDDEDEDILKVFRKQKVDVEIEKAVSRVMSMVDSPDARDQYRRMLEKYRQSKAELVAGTSDEVSSTTSVGNALFMEDDLYPFP* 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1778 987 Gene3D - 583 721 IPR036770 -
Pvu2g1778 987 ProSiteProfiles Ankyrin repeat profile. 654 686 IPR002110 GO:0005515
Pvu2g1778 987 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Pvu2g1778 987 ProSiteProfiles IQ motif profile. 850 875 IPR000048 GO:0005515
Pvu2g1778 987 SMART CG_1_2 12 130 IPR005559 GO:0003677
Pvu2g1778 987 SUPERFAMILY E set domains 425 509 IPR014756 -
Pvu2g1778 987 SMART ANK_2a 654 683 IPR002110 GO:0005515
Pvu2g1778 987 SMART ANK_2a 693 722 IPR002110 GO:0005515
Pvu2g1778 987 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 5 975 - -
Pvu2g1778 987 ProSiteProfiles IQ motif profile. 773 796 IPR000048 GO:0005515
Pvu2g1778 987 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Pvu2g1778 987 ProSiteProfiles Ankyrin repeat region circular profile. 654 680 - -
Pvu2g1778 987 Pfam Ankyrin repeats (3 copies) 636 714 IPR002110 GO:0005515
Pvu2g1778 987 MobiDBLite consensus disorder prediction 133 183 - -
Pvu2g1778 987 Gene3D Immunoglobulins 419 513 IPR013783 -
Pvu2g1778 987 SUPERFAMILY Ankyrin repeat 624 716 IPR036770 -
Pvu2g1778 987 SMART iq_5 826 848 IPR000048 GO:0005515
Pvu2g1778 987 SMART iq_5 849 871 IPR000048 GO:0005515
Pvu2g1778 987 SMART iq_5 771 793 IPR000048 GO:0005515
Pvu2g1778 987 Pfam IPT/TIG domain 425 508 IPR002909 -
Pvu2g1778 987 ProSiteProfiles IQ motif profile. 827 856 IPR000048 GO:0005515
Pvu2g1778 987 CDD IPT 425 510 - -
Pvu2g1778 987 Gene3D - 826 875 - -
Pvu2g1778 987 Pfam IQ calmodulin-binding motif 852 871 IPR000048 GO:0005515
Pvu2g1778 987 Pfam IQ calmodulin-binding motif 829 847 IPR000048 GO:0005515
Pvu2g1778 987 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 5 975 - -
Pvu2g1778 987 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 774 874 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1778 Pvu-Chr2 32095502 32104715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1778 5 959 CAMTA Transcription Factor Family AT1G67310 53.307 0.0 910
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Pvu2g1778 CG-1 3.4e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1778 K21596 - gmx:100786880 1590.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1778 2 32095502 32104715 Pvu2g1778 2 32095502 32104715 ECH
Pvu1g2714 1 51711829 51722211 Pvu2g1778 2 32095502 32104715 PCT