Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1759 ATGGACCTGACCTCCAGCAGTACCCACACAGTACAAACCTTGGATGCAGATACTAGGATCACACCACCCATCAACCCCACCAACAATACCACCCCAAAGTCTCTATCTTTCACCAACGGCACACCCAAGCGCCACCCCACCACCATCGGTGCTCCACTGCCACTACCACCGCCCATGGTGGTTACCTACAAAGAATGCCTCAAAAACCACGCCGCCAGCCTAGGTGGCCATGCACTCGATGGCTGTGGCGAGTTCATGCCTTCCTCCTCAACCAACCCCACCGATCCTCGCTCCCTTAAGTGCGCCGCGTGTGGCTGCCACCGCAACTTCCACCGCCGTGATCCTCAAGAACACAACAACCTCAACTACAACATTCACAGCACCAACACCGCCGCCGCCGCCAACAATAACCCCACTTTTCTAAGCTGCATCTACACGCCTTCAGCACCAGCACCAATCTCTCAGCGAGCCATGAGCCAAAGCACGAGTCCGAGCTTGAGTTCGAGCCCGAGTCACAGTCCGAGCCCAATGTCAAGCCCCTCACCTCCTCCACTCTCCCACGTGCCGCCGTACCACGCTTCAGCACCCCACATGCTTTTAGCCCTCGGCACTGGCTATTCTACACCCTCCGATGAACATCACCACCACAGAGGCCTCACCTTTTCGAGCGTGATGTTGAAGAGCGAGAACCCGAAGAAGAGGTACAGGACCAAGTTCAGCAAAGAGCAGAAGGAGAAGATGCATAGCTTCTCTGAGAAACTGGGGTGGAGAATGCAGAAAGGGGATGATGGATTGGTCCAGCAATTCTGCAATGACATTGGGGTCTCTAGAGGGGTATTCAAGGTGTGGATGCACAACAACAAGAACACTCTTAGGAGAAGATTGGATCAAGGGGAAAATGCAAATCCAAACGCAAATGCAAATTCTTCTCAAAGTGTTGGGGATCATGATGACGGCAATAATACCAGTGGTGGAGGTGGTTTTGACAGTGATATCAACAACCCCTACAATCCAAATAGCAACAACAACAATGACATTCACATGAATGAAGAAGATGATGGATGTCGCAATGTTCATGTTTCTCTTAATGGGTTGTCATCTTAG 1104 0.519 MDLTSSSTHTVQTLDADTRITPPINPTNNTTPKSLSFTNGTPKRHPTTIGAPLPLPPPMVVTYKECLKNHAASLGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRRDPQEHNNLNYNIHSTNTAAAANNNPTFLSCIYTPSAPAPISQRAMSQSTSPSLSSSPSHSPSPMSSPSPPPLSHVPPYHASAPHMLLALGTGYSTPSDEHHHHRGLTFSSVMLKSENPKKRYRTKFSKEQKEKMHSFSEKLGWRMQKGDDGLVQQFCNDIGVSRGVFKVWMHNNKNTLRRRLDQGENANPNANANSSQSVGDHDDGNNTSGGGGFDSDINNPYNPNSNNNNDIHMNEEDDGCRNVHVSLNGLSS* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1759 367 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9-LIKE 1 323 - -
Pvu2g1759 367 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Pvu2g1759 367 MobiDBLite consensus disorder prediction 154 174 - -
Pvu2g1759 367 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 232 289 IPR006455 -
Pvu2g1759 367 Gene3D - 223 292 - -
Pvu2g1759 367 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 323 - -
Pvu2g1759 367 MobiDBLite consensus disorder prediction 1 45 - -
Pvu2g1759 367 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 62 114 IPR006456 -
Pvu2g1759 367 MobiDBLite consensus disorder prediction 154 192 - -
Pvu2g1759 367 SUPERFAMILY Homeodomain-like 227 293 IPR009057 -
Pvu2g1759 367 MobiDBLite consensus disorder prediction 1 53 - -
Pvu2g1759 367 MobiDBLite consensus disorder prediction 298 352 - -
Pvu2g1759 367 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Pvu2g1759 367 MobiDBLite consensus disorder prediction 298 345 - -
Pvu2g1759 367 MobiDBLite consensus disorder prediction 175 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1759 Pvu-Chr2 31743096 31744932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1759 49 291 ZF-HD Transcription Factor Family AT1G69600 47.200 3.88e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pvu2g1759 ZF-HD_dimer 3.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1759 - - vra:106766949 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1759 2 31743096 31744932 Pvu2g1759 2 31743096 31744932 ECH