Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1758 ATGAGCGATCATCTGGTGCTGTTCGTGGACCGTCTGGTACGGCCCGTGCCGGTGGTGGAGCCGCTGGCCCAGCACCCGGTCCAGCCCTCCCCCGAGCCCTCGACCCCCGTCGATGAGGCTGCGGCAGGCCCCTCCGGCCCCGCTTCGGTGGCCCAGGACGACAGCGACGACGAGGACTCGCTGCTGCTGCCCTTGGCGGAGTGTCGCATTTGCCAAGAGGAGGATAGCATCAACAATTTAGAAACGCCCTGCTCCTGCAGCGGTAGTCTTAAGTATGCTCATAGAAAGTGCGTGCAGCATTGGTGTAATGAGAAAGGAGACATAATTTGTGAGATTTGTCACAAGTCGTATGAACCTGGTTATACTGCACCACCACCTCGTCCTCCGCCTGAAGAAACTACGATTGATATAGGTGGAGGCTGGACAATCTCTGGCATGCCATTGGATTTGCGTGACCCCCGCCTCTTGGCAATTGCAGAGGCAGAACGTCAATTCTTGGAAGCTGAATATGATGGATATGCTGCTTCAAATGCCAGTGGAGCTGCATTTTGTCGTTCAGTTGCTCTGATTTTAATGGCCCTATTACTTTTGAGGCATGCACTTTCTGTCACGGATGCTGATGCTGAAGATGATCCTTCTACTTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCCTGGGCAATCAGTATTCTGCAACGCCGGCGACAAAGACAAGAGGCTGCAGCACTAGCAGCAACTCAAGTTGCTTTTGTTCTACAATCTGAACAACGTAGGGGTCTGCAGTTTGCCATAGCACAAGGACCAACAATGAACACACACCAGGAACAAGTGTAG 861 0.5226 MSDHLVLFVDRLVRPVPVVEPLAQHPVQPSPEPSTPVDEAAAGPSGPASVAQDDSDDEDSLLLPLAECRICQEEDSINNLETPCSCSGSLKYAHRKCVQHWCNEKGDIICEICHKSYEPGYTAPPPRPPPEETTIDIGGGWTISGMPLDLRDPRLLAIAEAERQFLEAEYDGYAASNASGAAFCRSVALILMALLLLRHALSVTDADAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSEQRRGLQFAIAQGPTMNTHQEQV* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1758 286 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 274 IPR033275 -
Pvu2g1758 286 CDD RING_CH-C4HC3_MARCH 68 114 - -
Pvu2g1758 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 274 - -
Pvu2g1758 286 SUPERFAMILY RING/U-box 67 118 - -
Pvu2g1758 286 Coils Coil 156 176 - -
Pvu2g1758 286 MobiDBLite consensus disorder prediction 23 58 - -
Pvu2g1758 286 SMART ringv_2 67 114 IPR011016 GO:0008270
Pvu2g1758 286 Pfam RING-variant domain 68 113 IPR011016 GO:0008270
Pvu2g1758 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 122 IPR013083 -
Pvu2g1758 286 Pfam Protein of unknown function (DUF3675) 119 237 IPR022143 -
Pvu2g1758 286 ProSiteProfiles Zinc finger RING-CH-type profile. 60 120 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1758 Pvu-Chr2 31700112 31702881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1758 56 113 C3H Transcription Factor Family AT2G37950 42.623 6.63e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1758 - - gmx:100817542 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1758 2 31700112 31702881 Pvu2g1758 2 31700112 31702881 ECH