Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1753 ATGGGCAGGGTAAAACTAAAGATAAAGAGGTTGGAGAACACCAATGGCCGGCAAGCAACATATGCTAAAAGGAAAAATGGAATTATGAAAAAAGCTGCTGAATTATCTATATTGTGTGATATAGATATCATACTTCTCATGTTTGCACCAAATGGAAAGCCTTCGGTATGTAGGGGGAGACGCAGCAACTTAGAGGAAGTTATTGCGAAGTTTGCTCAACTAACTCCTCAGGAAAGGGCAAAAAGGAAGTTGGAGACTCTTGAGGCACTGAAGAAAACGTTTAAGAAGTTAGATCATGATGTAAATATACAAGAATTTCTGGGTACAAGTAGTCAAACTATTGAGGATTTGAGTAATCAAGCCAGGTTATTACAGTCTCAAATTTCTGAAACTCATAAGAGATTAAGTTATTGGACTGAGTTTGATAAAATAACCAATGTGGAACAACTAGGACAGATGGAAAATTCACTCAGGGAGTCCCTTAATCAAATTCGAACCCGTAAGGAAAATATAAAAAAGCAGCAACTTGTGTCGCTGCAATGCAATAATCAGTTCAATGAAATGAATATTCCCTTTAGAATGAGTGCAGAGCAGCATCTCCAACCTCTTTCATGGATTGCAAATGGTGACAGCCAAAATATAGTTTTGCCTGAGGACTCAAGCATGTTTATCCACAAAGATGTAGAGGGATCTGCAAGTTCATCTTTTGGGAGTTATGCGAGTTATCTTGGGTCAAGTATGAAGAATGAGATGTCTAACTCGGCACAAGAAAATGGGGTCCTCAGTGACATGAGCAGTACTGCAAATATGAGACTACAATTGAATGGACAGTTTCCATACCTGCCATACAATTTTAATTTACTGAATAATTTGAAGTTTCAACCAACTGCAGAGATCAATCCACATGAAAATCCTGTAGATTATCAAGTGAATGGAAGCTTAGAAGCACCTAGATCTGGTTATGATTCTAATCACCATGGTTGGGCTTCCACATCTGGGCATTGTGGTGTTACTATGTTTGATGAGCAGTTGTATGCCCAGGCAAGCTCCACTAAAATTCACTTTGGCTTCACATAG 1077 0.3872 MGRVKLKIKRLENTNGRQATYAKRKNGIMKKAAELSILCDIDIILLMFAPNGKPSVCRGRRSNLEEVIAKFAQLTPQERAKRKLETLEALKKTFKKLDHDVNIQEFLGTSSQTIEDLSNQARLLQSQISETHKRLSYWTEFDKITNVEQLGQMENSLRESLNQIRTRKENIKKQQLVSLQCNNQFNEMNIPFRMSAEQHLQPLSWIANGDSQNIVLPEDSSMFIHKDVEGSASSSFGSYASYLGSSMKNEMSNSAQENGVLSDMSSTANMRLQLNGQFPYLPYNFNLLNNLKFQPTAEINPHENPVDYQVNGSLEAPRSGYDSNHHGWASTSGHCGVTMFDEQLYAQASSTKIHFGFT* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1753 358 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Pvu2g1753 358 Coils Coil 77 97 - -
Pvu2g1753 358 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 349 - -
Pvu2g1753 358 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu2g1753 358 Coils Coil 154 174 - -
Pvu2g1753 358 Coils Coil 114 134 - -
Pvu2g1753 358 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 349 - -
Pvu2g1753 358 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Pvu2g1753 358 CDD MADS 2 56 - -
Pvu2g1753 358 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Pvu2g1753 358 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Pvu2g1753 358 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu2g1753 358 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu2g1753 358 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1753 Pvu-Chr2 31505120 31510997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1753 1 347 Type I MADS-box Gene Family AT2G03060 49.735 1.93e-109 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu2g1753 SRF-TF 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1753 - - gmx:100811701 614.764