Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1752 ATGTCCCACATGGATTTTGGAGATTTTCCCGCTCCGAACAACACGGGTCCAGCCACAAAACACCCTTTGCAACATCAAAAGTGGACCTCTGGTAACTGGGCCTATAAATTAGGTCGCACCCCCTCTCATTTTCTTCACAACGCTTCTTCTCTCTACACTACCTGCTGCTTCTTCCGTTGTCCCTCTCTATTGAAGAAAATGGCTCTTGTTATCTTGATGGGTTTTCTCACAGTATTCTCCTCTGCTCATGCTTATGATGGAGGGTGGACTACTGCTCATGCCACTTTCTATGGTGGGAGTGATGCATCAGGGACAATGGGTGGGGCATGTGGGTATGGGAACCTCTACAGCCAAGGCTACGGAACAAACACTGCTGCTTTGAGCACTGCACTGTTCAACAATGGTTTAAGCTGCGGCTCTTGCTTTGAGATTAGGTGTGCCAATGACCACAAGTGGTGCCTTCCAGGCTCCATTTTGGTAACTGCAACCAATTTCTGTCCACCAAACAATGCCTTACCCAACAATGCTGGTGGCTGGTGTAACCCTCCTCTTCAACACTTTGATCTCGCTCAACCTGTCTTCCTGCGCATTGCTCAATACCGCGCTGGAATTGTGCCTGTTTCCTACAGAAGGGTGCCCTGCAGGAGAAAGGGAGGGATCAGGTTCACCATCAATGGGCATTCTTACTTCAACCTAGTCCTCATCACAAACGTTGGTGGTGCTGGGGATGTGCATGGTGTGGCCGTCAAAGGTTCAAAAACTGGTTGGGCGCCAATGTCAAGGAACTGGGGTCAGAACTGGCAGAGCAACAACTATCTGAATGGTCAAAGCCTTTCCTTCAAGGTTACAACAAGTGATGGGCGAACTGTGGTGTCTAACAATGTTGCTCCTGCTGGTTGGTCATTTGGACAAACCTACACTGGTGCTCAATTCCGGTAG 939 0.492 MSHMDFGDFPAPNNTGPATKHPLQHQKWTSGNWAYKLGRTPSHFLHNASSLYTTCCFFRCPSLLKKMALVILMGFLTVFSSAHAYDGGWTTAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCFEIRCANDHKWCLPGSILVTATNFCPPNNALPNNAGGWCNPPLQHFDLAQPVFLRIAQYRAGIVPVSYRRVPCRRKGGIRFTINGHSYFNLVLITNVGGAGDVHGVAVKGSKTGWAPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSNNVAPAGWSFGQTYTGAQFR* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1752 312 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 229 308 IPR007117 -
Pvu2g1752 312 PRINTS Expansin signature 119 133 IPR002963 GO:0009664
Pvu2g1752 312 PRINTS Expansin signature 146 157 IPR002963 GO:0009664
Pvu2g1752 312 PRINTS Expansin signature 158 168 IPR002963 GO:0009664
Pvu2g1752 312 PRINTS Expansin signature 177 194 IPR002963 GO:0009664
Pvu2g1752 312 PRINTS Expansin signature 194 207 IPR002963 GO:0009664
Pvu2g1752 312 PRINTS Expansin signature 218 230 IPR002963 GO:0009664
Pvu2g1752 312 PRINTS Expansin signature 230 251 IPR002963 GO:0009664
Pvu2g1752 312 PRINTS Expansin signature 265 286 IPR002963 GO:0009664
Pvu2g1752 312 PRINTS Expansin signature 294 310 IPR002963 GO:0009664
Pvu2g1752 312 PRINTS Expansin/Lol pI family signature 88 103 IPR007118 GO:0005576
Pvu2g1752 312 PRINTS Expansin/Lol pI family signature 106 124 IPR007118 GO:0005576
Pvu2g1752 312 PRINTS Expansin/Lol pI family signature 128 146 IPR007118 GO:0005576
Pvu2g1752 312 PRINTS Expansin/Lol pI family signature 202 218 IPR007118 GO:0005576
Pvu2g1752 312 PRINTS Expansin/Lol pI family signature 256 270 IPR007118 GO:0005576
Pvu2g1752 312 PRINTS Expansin/Lol pI family signature 294 308 IPR007118 GO:0005576
Pvu2g1752 312 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 107 219 IPR007112 -
Pvu2g1752 312 SMART dpbb_1 124 209 IPR007112 -
Pvu2g1752 312 Gene3D - 76 215 IPR036908 -
Pvu2g1752 312 MobiDBLite consensus disorder prediction 1 24 - -
Pvu2g1752 312 Gene3D - 219 311 IPR036749 -
Pvu2g1752 312 SUPERFAMILY PHL pollen allergen 216 308 IPR036749 -
Pvu2g1752 312 Pfam Expansin C-terminal domain 220 297 IPR007117 -
Pvu2g1752 312 Pfam Lytic transglycolase 124 209 IPR009009 -
Pvu2g1752 312 PANTHER EXPANSIN-A10 68 312 - -
Pvu2g1752 312 PANTHER EXPANSIN-A15 68 312 IPR002963 GO:0009664
Pvu2g1752 312 SUPERFAMILY Barwin-like endoglucanases 88 237 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1752 Pvu-Chr2 31496697 31498796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1752 63 312 Expansin Gene Family AT2G03090 80.952 4.26e-153 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1752 - - gmx:100527059 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1752 2 31496697 31498796 Pvu2g1752 2 31496697 31498796 ECH
Pvu2g1752 2 31496697 31498796 Pvu9g1926 9 27567879 27570714 ECH