LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu2g1750	ATGGCAGCAGAAGAAGATGATCAGTTGCAACAAGTCAGATCCAAAGCCACAGAGCTTTTCATCAGAGAAGAATGGAATGCCTCGATCGAAGCCTATTCCCATTTCATAACCCTCTGCACCCAAACGCTCTCCCATTCTCACCCAAACCAAAAGCTTCGCAGATCCCTCTGCATAGCCTTGTGCAATCGCGCAGAAGCGAGGTCCAAGTTGAAGGACTTCCACTGCGCCCTTCAGGACTGTGACCACGCTTTGGAACTCGATGCTACGCACTCGAAATCCCTTTTGTGCAAAGGTAAGATCTTGCTCTGCCTCAACCGGTATGCTTCCGCTCTTGAGTGCTTCAGAACTGCCATGCTTGATGGGAACGCTGAAAGCGTGAGCGGGTACTTGGAGAGGTGCAAAAGCTTGGAGCTTTTGTCCAAAACGGGGTGTTTGGATCTTTCGGATTGGGTTTCAAATGGGTTTCGAGGGAAGGTTCCAGAGCTTGCAGAGCACATTGGTGCCGTGGAGATTAGAAGATCTGAGATCAGTGGGAGAGGATTGTTTGCAACGAAGAATATTGATGCCGGGTCGTTGATCTTGGTCACCAAGGCAATTGCCATGGAAAGGAGTATCATAATGGGAGGGGTTCAGGATCTGACTGAGGATGCACAGTTGGCAATGTGGAAGAATTTCATTGACAAGGTTTTTGAGTTTGTTGGGAAGTGTCCCAGAACAAGGGGTTTGATTAATAGGTTGTCATGTGGGGAGAATGAGGATCAACTTGAGGTGCCTGATGTGGGTCTCTTTAGACCTGAGACTGTGGAGAAGGATGGTGAAGTTGAAGTTGTTGTTGATATGGTTAAATTGGTTGGTATATTGGATGTGAATTCTCTCACTGAGGATGCTGTCTCGGCCAATGTGTTGAGGAGGGGCAATGATTGTTATGGTGTTGGGCTGTGGTTGCTCCCTTCCTTAATAAACCACTCTTGTTGTCCCAATGCAAGGAGGTTGCATGTTGGGGACTACTTGGTGGTTCATGCTTCAAAGGATTTGAAGGCTGGGGAGGAGGTCACTTTTGCTTATTTTGACCCTTTGTGTGGTTTGAGCAAGAGGAAGGAGATGTCTGTGAACTGGGGGATTCATTGCAAGTGCAAGAGGTGTAGGTTTGAGGGGGAAGTGTTCTCGAAACAGGAAATAAGAGAGATTGAGATTGGTCTTGAGAGAGGGATGGATGTGGGGGGTGTGGTGTTCAAGTTGGAGGAGCAATTGAAGAGGTTGAAGGTTAGGGGGAAGGAGAAAGGGTATTTGAGGGCATCATTTTGGGAAGCGTATTCTCAGGCTTATAGGTCAGAAAGGGCCATGAAGAGGTGGGGAAGGAGGATTCCTACTGCGGAGGCTGTGGTTGATAGCATCACTGATGTGGTGGGAGGGGATCACAGGTTGCTTAAGTTGCTGATGGAGGAGTTGAAGAAAAATAGTGGAGTTGTAGAGAGGGACAAAGTTTTCAAGATAGCAAAACAAGTGTTTGGGAAGGTAGTGAAAAAGCAAGCAATGAAGACACTTCTGCAACTCTGCATTGGTGATTAA	1569	0.4742	MAAEEDDQLQQVRSKATELFIREEWNASIEAYSHFITLCTQTLSHSHPNQKLRRSLCIALCNRAEARSKLKDFHCALQDCDHALELDATHSKSLLCKGKILLCLNRYASALECFRTAMLDGNAESVSGYLERCKSLELLSKTGCLDLSDWVSNGFRGKVPELAEHIGAVEIRRSEISGRGLFATKNIDAGSLILVTKAIAMERSIIMGGVQDLTEDAQLAMWKNFIDKVFEFVGKCPRTRGLINRLSCGENEDQLEVPDVGLFRPETVEKDGEVEVVVDMVKLVGILDVNSLTEDAVSANVLRRGNDCYGVGLWLLPSLINHSCCPNARRLHVGDYLVVHASKDLKAGEEVTFAYFDPLCGLSKRKEMSVNWGIHCKCKRCRFEGEVFSKQEIREIEIGLERGMDVGGVVFKLEEQLKRLKVRGKEKGYLRASFWEAYSQAYRSERAMKRWGRRIPTAEAVVDSITDVVGGDHRLLKLLMEELKKNSGVVERDKVFKIAKQVFGKVVKKQAMKTLLQLCIGD*	523

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu2g1750	522	ProSiteProfiles	SET domain profile.	167	356	IPR001214	GO:0005515
	Pvu2g1750	522	SUPERFAMILY	TPR-like	13	118	IPR011990	GO:0005515
	Pvu2g1750	522	SMART	tpr_5	91	123	IPR019734	GO:0005515
	Pvu2g1750	522	SMART	tpr_5	57	90	IPR019734	GO:0005515
	Pvu2g1750	522	CDD	SET_SMYD	302	381	-	-
	Pvu2g1750	522	Gene3D	SET domain	257	385	IPR046341	-
	Pvu2g1750	522	SUPERFAMILY	SET domain	168	381	IPR046341	-
	Pvu2g1750	522	Gene3D	Tetratricopeptide repeat domain	2	140	IPR011990	GO:0005515
	Pvu2g1750	522	PANTHER	TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710)	3	509	-	-
	Pvu2g1750	522	Pfam	SET domain	178	355	IPR001214	GO:0005515
	Pvu2g1750	522	SMART	set_7	167	362	IPR001214	GO:0005515

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Pvu2g1750		SET	1.2e-11	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu2g1750	-		-	gmx:100812233	914.064