Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1749 ATGGGCAGGTCACCATGCTGTGAAAAGGTGGGCTTGAAGAAAGGCCCTTGGACTCCCGAGGAGGACAAAAAGCTCATGGCTTACATAGAAGAGTTCGGCCACGGAAGCTGGCGTGCCTTGCCTTCCAAAGCTGGCCTTCAAAGATGTGGGAAGAGCTGCAGACTCAGGTGGACTAACTACCTTCGACCCGACATTAAAAGGGGAAAGTTCAGCTTGCAGGAAGAGCAAACAATCATTCAACTCCATGCCCTTCTTGGGAACAGATGGTCAGCTATAGCGGCTCAACTTCCGAAGAGGACAGACAATGAGATAAAGAACTACTGGAACACACACCTGAAGAAAAGGTTAACCAGAATGGGGATAGACCCCACCACCCACAAGCCCAAAACCGATGCACTTGGTGGCTCCGGTGGTTGCCAATCCAAGGACGCAGCCAACCTGAGCCACATGGCGCAGTGGGAGAGTGCCCGTCTCGAAGCCGAAGCAAGGCTGGTGAGAGAGTCAAAGTTGCAAGTCCAGAACAACCTCGGATCCTGCTCCAACCCTCAACCGGCGAGGCTGGTCCTCAACAAAATCACTACGCAACAACCCTCTCTACCACCCTGTCTCGACATCCTCAAAGCATGGCAAAGCTCATGGTCCAAGCCACAACCACCAACAAAAGAAAGTAACCCCAAAATGATGCATAGCATGTACGCCATGATGCTATCCACCGAAGACACTCTTGAGTCTCCAACCTCTACGTTGTGCTTTCCAGGAACAACATCAACTATGCTTCCTGTCTCCAACAATAACAACATTGGAGTACTGTTCAATGAAAACAACAACAACGACATGTTTCCTCTCTCCAGCACAAACATGGAAAGTGGGTTCATGAAAGAGAACACAGTGTTACATTTGCAAGACGATGATATTATGGCGGCTGTGGAAGCATTTAGAGCCACTACTACAGTGTACGACAGCAATCATAATGTCGTTCCTCCCACACTCCCCAACGGTGGCGTCCTCGAAGGACTCAACGATGATGAAGGGTTGGTTTATGAGTCCAACGATAACTTGGGAGTGGAGGAAGAAAACATGGCAATGATGAACGGGGATGGAAGCCTCTGCAACGTGAACCTGGAAGAGAATAACAAGCATTACTGGAATAACATATTTAATTTGGTGAATGATCCTTTGTCTGGTTCCTCTGTCTTCTGA 1200 0.4892 MGRSPCCEKVGLKKGPWTPEEDKKLMAYIEEFGHGSWRALPSKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTDALGGSGGCQSKDAANLSHMAQWESARLEAEARLVRESKLQVQNNLGSCSNPQPARLVLNKITTQQPSLPPCLDILKAWQSSWSKPQPPTKESNPKMMHSMYAMMLSTEDTLESPTSTLCFPGTTSTMLPVSNNNNIGVLFNENNNNDMFPLSSTNMESGFMKENTVLHLQDDDIMAAVEAFRATTTVYDSNHNVVPPTLPNGGVLEGLNDDEGLVYESNDNLGVEEENMAMMNGDGSLCNVNLEENNKHYWNNIFNLVNDPLSGSSVF* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1749 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu2g1749 399 CDD SANT 69 112 IPR001005 -
Pvu2g1749 399 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu2g1749 399 CDD SANT 16 61 IPR001005 -
Pvu2g1749 399 SMART sant 13 63 IPR001005 -
Pvu2g1749 399 SMART sant 66 114 IPR001005 -
Pvu2g1749 399 Gene3D - 69 116 - -
Pvu2g1749 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu2g1749 399 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu2g1749 399 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu2g1749 399 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pvu2g1749 399 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 392 - -
Pvu2g1749 399 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 392 - -
Pvu2g1749 399 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu2g1749 399 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1749 Pvu-Chr2 31328746 31330573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1749 1 399 MYB Transcription Factor Family AT3G01140 47.537 4.92e-107 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu2g1749 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1749 K09422 - gmx:100809025 669.848