Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1738 ATGGCAAACAAGAGAAAAAGATGGGAATGTGAAGGAGGAGAAAAGAACAGTGAAGAAGGTAACACTGAATGGGAAAAACTAAGGGAAGAAGCAGCTTCAATGGCTGCTGCTATACTTAGAGCTAGAAGAGCTAACAAACGTTACATTGGGGTGAGACAAAGACCCTCAGGGCGATGGGTGGCTGAAATCAAAGACACCATACAGAACATTAGACTTTGGTTAGGCACTTACGACAATGCTGAAGATGCTGCAAGAGCTTATGATGCTGCAGCACGTTTGCTTCGTGGTGCCAACACTCGCACTAACTTTTTTCCATCCCAATATTCTCCTTCTGTTTCTGCTCTTCCTCCAAAAATTGCCAAACTCCTCCTTGTTAGGCTCAAAGCTAGAAACTTTGCCTCTTCATGTAGGGTTACCTCTCCTCTTCCCAGTAACCACTATGATCAAGAAACCAAAGTAGAACCTCAACCTGAACCAGAACATGAATCTCAGCCTGAACCAGAACCTATATTATATCTCCAAACAGAAGAACCCCACTACGGGAATTTTGTAGATATGAAAGGAAATGGGATTGTTGAAGAAAGTTATTATGGTGCTAGTTATGGTTCTTATGACATAACTACTTGTGACCATAGCTGCGGAACTCATGAAGAAACTTCTAACCAAAAGTGTAGCGGGGAAGATTTCAGCTTCGGGTATAATTTTGGTGATCATGTTTATGATGAAAACAAGCACATTGTGAGTGGTAAAGGAGAGTTGGAAGCTTGTGATTTTCAGTTTTTGGACTGTGCTGGATCACTGAGTTACTCTTTTTCTCCATTTGAGATAGCAGAAGAGATGGTGGGAGCGATAGAGGAATACAGTTATTACGATGTTGATGATTCATCCTTAGGTAGAGAAACTTTCAGGATGAAGTATGAACGTAAATTCTCGGCTTGTCTTTACACCTTAACCGGAGTGTCTGAGTGTTTGAGGCTACAAGTTGGACCAGAAAATGGAAAGGAATTCGAAGGTTTTTTAGGATGCTAA 1029 0.414 MANKRKRWECEGGEKNSEEGNTEWEKLREEAASMAAAILRARRANKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDNAEDAARAYDAAARLLRGANTRTNFFPSQYSPSVSALPPKIAKLLLVRLKARNFASSCRVTSPLPSNHYDQETKVEPQPEPEHESQPEPEPILYLQTEEPHYGNFVDMKGNGIVEESYYGASYGSYDITTCDHSCGTHEETSNQKCSGEDFSFGYNFGDHVYDENKHIVSGKGELEACDFQFLDCAGSLSYSFSPFEIAEEMVGAIEEYSYYDVDDSSLGRETFRMKYERKFSACLYTLTGVSECLRLQVGPENGKEFEGFLGC* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1738 342 MobiDBLite consensus disorder prediction 1 24 - -
Pvu2g1738 342 CDD AP2 46 103 IPR001471 GO:0003700|GO:0006355
Pvu2g1738 342 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 337 - -
Pvu2g1738 342 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Pvu2g1738 342 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Pvu2g1738 342 MobiDBLite consensus disorder prediction 140 167 - -
Pvu2g1738 342 MobiDBLite consensus disorder prediction 151 165 - -
Pvu2g1738 342 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Pvu2g1738 342 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Pvu2g1738 342 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Pvu2g1738 342 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Pvu2g1738 342 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 337 - -
Pvu2g1738 342 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1738 Pvu-Chr2 31177497 31178525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1738 43 123 AP2-EREBP Transcription Factor Family AT5G19790 63.415 1.30e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu2g1738 AP2 4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1738 K09286 - gmx:100793940 414.846