Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1683 ATGTCCACCACCGCAACTTCAACAACATCAGAAGTTAGCAGCAAAGAGTGGAAAGTGATACACATGAGCGAGCAAGAGGAGGATCTCATTCACAGGATGTACAAGCTAGTCGGAGACAAGTGGAATTTGATAGCGGGTCGGATTCCGGGTCGGAAAGCAGAAGAGATAGAGAGATTCTGGATTATGAGACACACTCATGCTTTTTCTGTTACAACAAATCAAAGTAAAGCCAAACACTCTTGA 243 0.4403 MSTTATSTTSEVSSKEWKVIHMSEQEEDLIHRMYKLVGDKWNLIAGRIPGRKAEEIERFWIMRHTHAFSVTTNQSKAKHS* 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1683 80 PANTHER MYB-LIKE TRANSCRIPTION FACTOR ETC3 4 76 - -
Pvu2g1683 80 SMART sant 18 66 IPR001005 -
Pvu2g1683 80 CDD SANT 22 60 IPR001005 -
Pvu2g1683 80 Pfam Myb-like DNA-binding domain 23 61 IPR001005 -
Pvu2g1683 80 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 4 76 - -
Pvu2g1683 80 SUPERFAMILY Homeodomain-like 23 61 IPR009057 -
Pvu2g1683 80 Gene3D - 22 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1683 Pvu-Chr2 30524585 30526731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1683 22 60 MYB Transcription Factor Family AT5G52600 58.974 8.65e-13 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu2g1683 Myb_DNA-binding 4.4e-06 CL0123