Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1673 ATGACTACGCCACCCACCAAGTACACACACCACACCAAACTACTCACACTCTCACACCACCCTCCCCAAAACCCATATCCCAGACTCGTCAGAATAACCGTCACGGACGCCGACGCCACCGACTCCTCCAGCGACGAAGAACAAACCTTCCACTCCTCCAAGCGCCTCCGACAACGCCACAGGAAATTCATCAACGAGATTTCCATCGAGCCCTGCGCCGGTAACAACAATGGCGTCTTTTCCAGGAAGAGAGTTCGAAGCAGGAGCGTGGTGGGGAAAGACAGAGTTGCAGAGACGCCGCGCGCGTCGACGGTTAAGAAATTCCGCGGAGTGAGACAAAGGCCGTGGGGAAAATGGGCGGCGGAGATACGCGACCCGTCGCGACGCGTGAGGCTATGGTTGGGTACCTACGACACTGCCGAGGAAGCCGCCTTAGTGTACGACAACGCGGCTATTAAGCTGCGTGGACCCGACGCGCTCACCAATTTCATAACGCCACCCGCCACGTGGCACAACGAAGACCCGACGCCGGCGCCCAACGGTTACGCCTCCGCCGAGGAAACTCAGAACAAAACCCTGTTTTCTCCCACTTCCGTTCTTCACTCTTGCTCTTTGTCTGAGGAAGCTGAATCCATAGCAGGCAAAGACGATGACTACTCCTCCGTGCCCGAGAGTTCCAAGGCCAAAGCTGAGTCACTGTTTCCGATTCCGAGCGAACTGAAATTTGACTTCCAAGACTGTTTGGCGGCGCCGGAGATGTTCGGCGAGTTGGACAGCGCTGCGGCGGCTGAGAGCGTGTTGTTCTCCGACGACGATTGGCCTGGTGTGTTTCTCACTGCTTGTGAGGATTTGGGTTTGAAAAGTTGGCATACAGACAGAAATCAGGAGTTTTTCCAAGATATCGACGATTTATTTGTCTCCGATCCTCTTCTTGCTCTCTGA 942 0.5531 MTTPPTKYTHHTKLLTLSHHPPQNPYPRLVRITVTDADATDSSSDEEQTFHSSKRLRQRHRKFINEISIEPCAGNNNGVFSRKRVRSRSVVGKDRVAETPRASTVKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAALVYDNAAIKLRGPDALTNFITPPATWHNEDPTPAPNGYASAEETQNKTLFSPTSVLHSCSLSEEAESIAGKDDDYSSVPESSKAKAESLFPIPSELKFDFQDCLAAPEMFGELDSAAAAESVLFSDDDWPGVFLTACEDLGLKSWHTDRNQEFFQDIDDLFVSDPLLAL* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1673 313 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Pvu2g1673 313 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Pvu2g1673 313 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 4 310 - -
Pvu2g1673 313 CDD AP2 106 163 IPR001471 GO:0003700|GO:0006355
Pvu2g1673 313 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Pvu2g1673 313 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 310 - -
Pvu2g1673 313 SUPERFAMILY DNA-binding domain 107 163 IPR016177 GO:0003677
Pvu2g1673 313 SMART rav1_2 107 170 IPR001471 GO:0003700|GO:0006355
Pvu2g1673 313 Gene3D AP2/ERF domain 106 165 IPR036955 GO:0003700|GO:0006355
Pvu2g1673 313 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1673 Pvu-Chr2 30433762 30435007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1673 1 313 AP2-EREBP Transcription Factor Family AT4G23750 38.857 1.05e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu2g1673 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1673 - - vra:106777252 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1673 2 30433762 30435007 Pvu2g1673 2 30433762 30435007 ECH
Pvu2g1673 2 30433762 30435007 Pvu2g3043 2 45929067 45930538 PCT