Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1650 ATGGCGAAGGAGCTTGAGAAGAAGGCGAAGGAAGCATTCTTCGACGACGACTTCTCTCTCGCCGTCGATTTCTACTCCGAAGCCGTACAACTAGATCCAAACGACGCTCATCTCTTCGCCGACAGAGCACAAGCCTATATTAAGCTCAACGCTTTCACTGAAGCAGTTTCCGATGCCAACAAAGCCATCCAGTTGAACCCTTCCTTGTCCAAGGCCTATCTTCGTAAAGGGACCGCTTGTATGAAACTGGAAGAATATCACACTGCCAAGGTAGCGCTTCAAAACGGTGCCGCTTTTGCGCAAGACGATTCAAGATTCTCCAAGTTGATTCAAGAATGTGATCGCTATATTTCAGAGGAATCAAATGGTCTTATTAGCACCGAATCGTCGGATGGTTCCCACTTGAGCAATACAAATGACGGGGTGACTAAAGAAGCTGAAGGAGACAGTTTGGTATCCCAAATCAATGAAGTCACAATAAACGCACCAACACCAAAATACAGACATGAATACTACCAAAAGCCAGAAGAAGTGGTTGTGACAATATTTGCAAAAGGAATATCTACAAAAGATTTGGTTGTTGACTTCGGTGAACAGATTCTTAGTGTAACCATTGATGTTCCTGGCCAAGATGCCTATCATTTCCAACCTCGATTGTTTGGGAAGATAATACCCAACAGCTGCAGATTTGTGGTATTGTCAACCAAAATTGAAATTCGTCTAGCAAAAGCTGAAGCTATTAATTGGACATCTCTGGAATATAGCAAGGATGCACTACCCCCTAAAATAAACATGCCTATCGTTCAATCTGAAAGGCCTTCGTACCCATCATCAAAACCAAGGGCAAAAGATTGGGATAAGTTGGAAGCTGAAGTGAAAAAAGAGGAAAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGACATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTCCTCCAGACGGCATGGAGCTGAAAAAATGGGAGTATTAA 1098 0.429 MAKELEKKAKEAFFDDDFSLAVDFYSEAVQLDPNDAHLFADRAQAYIKLNAFTEAVSDANKAIQLNPSLSKAYLRKGTACMKLEEYHTAKVALQNGAAFAQDDSRFSKLIQECDRYISEESNGLISTESSDGSHLSNTNDGVTKEAEGDSLVSQINEVTINAPTPKYRHEYYQKPEEVVVTIFAKGISTKDLVVDFGEQILSVTIDVPGQDAYHFQPRLFGKIIPNSCRFVVLSTKIEIRLAKAEAINWTSLEYSKDALPPKINMPIVQSERPSYPSSKPRAKDWDKLEAEVKKEEKEEKLDGDAALNKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSPPDGMELKKWEY* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1650 365 PANTHER PROTEIN SGT1 HOMOLOG 1 365 IPR044563 GO:0051087
Pvu2g1650 365 PANTHER PROTEIN SGT1 HOMOLOG A 1 365 - -
Pvu2g1650 365 MobiDBLite consensus disorder prediction 345 365 - -
Pvu2g1650 365 Gene3D - 165 256 IPR008978 -
Pvu2g1650 365 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Pvu2g1650 365 ProSiteProfiles SGS domain profile. 274 365 IPR007699 -
Pvu2g1650 365 Pfam Tetratricopeptide repeat 38 68 IPR019734 GO:0005515
Pvu2g1650 365 Pfam CS domain 168 243 IPR007052 -
Pvu2g1650 365 SMART tpr_5 70 103 IPR019734 GO:0005515
Pvu2g1650 365 SMART tpr_5 36 69 IPR019734 GO:0005515
Pvu2g1650 365 SMART tpr_5 2 35 IPR019734 GO:0005515
Pvu2g1650 365 Gene3D Tetratricopeptide repeat domain 1 132 IPR011990 GO:0005515
Pvu2g1650 365 Pfam SGS domain 283 363 IPR007699 -
Pvu2g1650 365 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Pvu2g1650 365 ProSiteProfiles CS domain profile. 164 253 IPR007052 -
Pvu2g1650 365 CDD p23_CS_SGT1_like 170 253 - -
Pvu2g1650 365 SUPERFAMILY TPR-like 2 113 IPR011990 GO:0005515
Pvu2g1650 365 SUPERFAMILY HSP20-like chaperones 163 263 IPR008978 -
Pvu2g1650 365 MobiDBLite consensus disorder prediction 124 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1650 Pvu-Chr2 30216226 30220402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1650 1 112 U-box Gene Family AT3G07370 27.679 3.15e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1650 K12795 - gmx:100784022 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1650 2 30216226 30220402 Pvu2g1650 2 30216226 30220402 ECH