Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1648 ATGGTTTGGGATTTGCAATCTATTGTGGGATGCACCATTGCCCCAGCCACCACTATGGACAACCCGAATCTCATTCTTTCTCAAGGTTTTTGTGCTGAACCAGATGACCTACTTTACGATTTTCAGGAATTCTCAGAAACCAAAACGGTGCTTAATGAATTGGAAGAGATTTACAAACCTTTCTACCCCAATGTTCATCACAACCCTCATCCCATCATTTCAAGTTCCCAACCTATCCCAGATAAAAATGTCAAAGAACTCAAACTATCAAACAAAGTAGACGTGCAAGCACAAGATTTGCACGACACGGAAGCATCTACATGCAGAAAAAGCAAAAAGAAGCAGAACAAGAAGAGGGTGGTGAAACATATGAACGCGGTAGATGGTGTGTCAGATCCATGGGCATGGCGTAAATATGGGCAGAAACCAATAAAGGGATCACCCTATCCACGAAGCTATTATAGATGCAGCAGCTCCAAAGGATGTTTGGCTAGGAAATTCGTGGAACTTAGCCATTTGGATCCCGGAGTTTTGATAGTTACCTACACCGCAGAACATAGTCCTCACCCAACTCGCAAAAACTCAAGAACAGGGAGGGGCAGTTCCACCATTGCACCTCCAACAACTCATAGTGATGATATGCAGACTCTTTCTTCAAGGATAAATGTGGTTGTGGAGGCCCTGGAAGTTGAGCATGAGCGTTTTAAAGTTCAACAGTAA 720 0.4347 MVWDLQSIVGCTIAPATTMDNPNLILSQGFCAEPDDLLYDFQEFSETKTVLNELEEIYKPFYPNVHHNPHPIISSSQPIPDKNVKELKLSNKVDVQAQDLHDTEASTCRKSKKKQNKKRVVKHMNAVDGVSDPWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKFVELSHLDPGVLIVTYTAEHSPHPTRKNSRTGRGSSTIAPPTTHSDDMQTLSSRINVVVEALEVEHERFKVQQ* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1648 239 MobiDBLite consensus disorder prediction 185 216 - -
Pvu2g1648 239 Gene3D WRKY domain 109 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu2g1648 239 PANTHER WRKY TRANSCRIPTION FACTOR 63-RELATED 3 218 - -
Pvu2g1648 239 ProSiteProfiles WRKY domain profile. 125 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu2g1648 239 Pfam WRKY DNA -binding domain 132 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu2g1648 239 SUPERFAMILY WRKY DNA-binding domain 124 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu2g1648 239 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 218 IPR044810 GO:0003700
Pvu2g1648 239 SMART WRKY_cls 130 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu2g1648 239 MobiDBLite consensus disorder prediction 194 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1648 Pvu-Chr2 30201373 30202358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1648 109 198 WRKY Transcription Factor Family AT5G52830 64.835 6.06e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pvu2g1648 WRKY 3.4e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1648 K13426 K13425 gmx:102667019 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1648 2 30201373 30202358 Pvu2g1648 2 30201373 30202358 ECH
Pvu2g1648 2 30201373 30202358 Pvu4g1125 4 34620507 34622280 ECH
Pvu2g1648 2 30201373 30202358 Pvu7g0770 7 6907213 6908842 ECH
Pvu2g1648 2 30201373 30202358 Pvu10g1086 10 36231937 36233733 ECH
Pvu2g1648 2 30201373 30202358 Pvu8g0593 8 5181941 5183860 ECH
Pvu2g1648 2 30201373 30202358 Pvu2g3018 2 45663178 45664544 PCT