Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1644 ATGGGTCACCACTCTTGCTGCAACCAACAGAAGGTTAAGAGAGGCCTTTGGTCTCCCGAGGAAGATGAGAAGCTCATCAGATACATTACCACTCACGGCTATGGTTGCTGGAGCGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGCAAGAGTTGTCGCCTGAGATGGATTAATTATCTGAGGCCTGACATTAGAAGAGGAAGGTTTACACCTGAAGAGGAGAAGTTAATTATAAGTCTTCACGGGGTTGTTGGCAACAGATGGGCACACATTGCAAGCCACTTACCAGGTAGAACTGACAATGAAATAAAGAACTATTGGAACTCTTGGATCAAAAAGAAAATTAGAAAGCCTTCGGTGACTTCATCAATCACCACTACACAAAGTGTTGATCATCACCACCCTCAGTTCAATTACAATTCCAATCAACTAGATCACTTTGGCAACCAAGACCATGTAACAACAAAGCCAGCGGTGCAAGAAACCTTATTTTCCTCGACGTGCCCTTTATTTATGTTTGACACTAGTTCATTAGACACCGGCAATGTTCGAGCAGAACTGTTCCAAGATTCATTGGGTTTGAGCGGTGAAACGTGGAACTTGAGCCACCACCAGGTCCATGCTCTTCCTCCCCAACCAGCAGAAGCAACGAGTTTTACAGCAGCTACAGTAATTGACACCACAAATTATCTGCCACCATTGATAGAGAATGTGGAAAACATGGTGGGAGGCATGGAGGTACAGTCTTGTAGTATAGAGGAGGAAGGAGAAATGGCGCTGGAGTGTTTGCGGAGACAAGAGTTGAATGAGTGGGTGGAGAATGAACAGCAGTGTCCGAGTTTTCTTTTCTGGGAGAACGTTGAAGGACAACTTGGGGGGGAAGAACTAGCACCAAACACGTCAAATATTGGAAGCAATACACTTTCACCTTTTCCTTCATCTTTATGA 951 0.449 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSVTSSITTTQSVDHHHPQFNYNSNQLDHFGNQDHVTTKPAVQETLFSSTCPLFMFDTSSLDTGNVRAELFQDSLGLSGETWNLSHHQVHALPPQPAEATSFTAATVIDTTNYLPPLIENVENMVGGMEVQSCSIEEEGEMALECLRRQELNEWVENEQQCPSFLFWENVEGQLGGEELAPNTSNIGSNTLSPFPSSL* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1644 316 MobiDBLite consensus disorder prediction 296 316 - -
Pvu2g1644 316 CDD SANT 69 112 IPR001005 -
Pvu2g1644 316 PANTHER MYB DOMAIN PROTEIN 55 1 315 - -
Pvu2g1644 316 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu2g1644 316 CDD SANT 17 61 IPR001005 -
Pvu2g1644 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu2g1644 316 Gene3D - 6 66 - -
Pvu2g1644 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu2g1644 316 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu2g1644 316 Gene3D - 68 139 - -
Pvu2g1644 316 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu2g1644 316 PANTHER MYB TRANSCRIPTION FACTOR 1 315 - -
Pvu2g1644 316 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pvu2g1644 316 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu2g1644 316 SMART sant 13 63 IPR001005 -
Pvu2g1644 316 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1644 Pvu-Chr2 30152825 30155210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1644 1 300 MYB Transcription Factor Family AT1G63910 51.117 2.28e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu2g1644 Myb_DNA-binding 4.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1644 K09422 K02947 gmx:100803556 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1644 2 30152825 30155210 Pvu2g3012 2 45587489 45590225 PCT