Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1636 ATGGCTCGACAACTGTGTGAAGAAAAATCATCAACTGGATTTTGCTACTCTGATGTATCACCGGGAAATCCAACGATGCTAGTGAACCAGATCCAAGGCTTCGTGTCAGAGCCGGAGATGTACAACCTCAGCACAGGCATGGAAATGATAGGGTTTCCTAAGAGTGACACAAACGCTGTCATGTGGAGAAGTTTCATCCCCAAACCGGGTCCCTCCTCTTCCAAGACCATCAACGACTCTTCCACCCCTTTCTACCACCATGACTACAACAACAGCAAGCCTTCAGATTTCACACCCGGGAATATTTCTGAAGCAAGTGCCGAGAATCTAATGGTAGGAGCTCATGATTCAGCCCCGTGGCAAGACGACAACAGCCATAGCAGGTTTGATGACTCTTCTTTAAGGTGTGTGTTCCCTTGTGAAGCGAATGAAAGGCCTAGTCAAGGTCTTTCACTCTCTCTCAGTTCTACCAACCCTTCCACTATCGGGTTGCAGTCTTTTGAGCTACGACAAACAAGCCATCATCCTGATTTTGTTCCCTCGAGTTCCAGAGAAGGGTTCTTTGGAAAACCAGTGAGTGTTCAGCAGCAACAGATGTTACAAGACGGGTATGTGAGTTCTAATTCCAAAGCTGCAAGTGTTTACCAACAAGGACATTTCCTGGTGAAGAACTCCAAGTATTTGGTGCCTGCACAGGACCTTCTTAACGAGTTTTGTAGCCTAGACGCAAAGCAAAGTGAGGCGGGAAAGCCCAAATCGTTGAAGAAGCAGTGGGAAGAGGAAAACAACTGTAGTGGTTCCTTGAAGAAGCCTTCTCTGACCTCTCTCGAGTTCGTGGAATTGCAGAAGAGAAAGACAAAGCTGCTTTCGATGCTGGAAGAGGTTGACAGAAGGTACAAGCACTACCGCAATCAGATGAAGAGCGTGGTGTCGTCGTTTGAAACGGTGGCGGGGAACGGTGCTGCCACGGTGTACTCGGCGTTGGCGCTGAAAGCCATGTCGAGACATTTCAAGTGTTTGAAGGATGGAATTTTGGGGCAAATTCAAACAACAAGAAAAGCCATGGGAGAGAAAGACCCAGTTGCACCAGGCACAACAAGGGGTGAAACGCCGAGGCTCAAAGTCATTGACCAAGCACTGAGACAACAAAGGGCGTTTCAGCAAATGAGCATGATGGAAACCCATCCTTGGAGACCCCAACGTGGCCTTCCCGAACGTGCTGTTTCGGTTCTTCGGGCTTGGCTTTTTGAGCATTTTCTCCATCCGTACCCAAGCGATGTCGATAAGCATATTCTAGCACGCCAAACTGGTCTCTCGAGAGGCCAGGTATCGAATTGGTTTATTAATGCAAGGGTGAGACTATGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAAGTGAAGGATCATGAAAACAACATGGCTTCCTCGGAGGGTGCTACTGATCCAGAGAATGATATAAACCCAAATGTTCAAAACCCTCCACCTCATTCAGCACGATCAGAGGATCAGAAGCCATCACTGCTTCGAATAGACTCCGAGTGTGCCTCCTCCATCATCAACAACAACCACACCCTAGATAACAAAAACGACCCAAAGGGCCAAGAACAGTGCTTTGGGTCGGTGGAGCTTGATTTTTCATCGTACACACACCACTCCTCGGGCATGGTTTCTTTCGGAAGTAATGATCAAAATGGGAACAGCCAGAGCGGGGTGTCTTTGACGCTAGGGTTACAGCAGCATGGAGTGAGCCTAGCGTTCCCGCCACCAACACAGAGTTCACTGTACTACCCAAACCCGAGGGACCAGATTGAAGATTGCCAACCAGTTCAGTACTCTCTTTTGGATGGTGAAGGACAAAACCTGCCTTACAGAAATTTGATGGGAGCACAGCTTCTCCATGATTTGGCAGGATAG 1917 0.483 MARQLCEEKSSTGFCYSDVSPGNPTMLVNQIQGFVSEPEMYNLSTGMEMIGFPKSDTNAVMWRSFIPKPGPSSSKTINDSSTPFYHHDYNNSKPSDFTPGNISEASAENLMVGAHDSAPWQDDNSHSRFDDSSLRCVFPCEANERPSQGLSLSLSSTNPSTIGLQSFELRQTSHHPDFVPSSSREGFFGKPVSVQQQQMLQDGYVSSNSKAASVYQQGHFLVKNSKYLVPAQDLLNEFCSLDAKQSEAGKPKSLKKQWEEENNCSGSLKKPSLTSLEFVELQKRKTKLLSMLEEVDRRYKHYRNQMKSVVSSFETVAGNGAATVYSALALKAMSRHFKCLKDGILGQIQTTRKAMGEKDPVAPGTTRGETPRLKVIDQALRQQRAFQQMSMMETHPWRPQRGLPERAVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRGQVSNWFINARVRLWKPMVEEMYLEEVKDHENNMASSEGATDPENDINPNVQNPPPHSARSEDQKPSLLRIDSECASSIINNNHTLDNKNDPKGQEQCFGSVELDFSSYTHHSSGMVSFGSNDQNGNSQSGVSLTLGLQQHGVSLAFPPPTQSSLYYPNPRDQIEDCQPVQYSLLDGEGQNLPYRNLMGAQLLHDLAG* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1636 638 MobiDBLite consensus disorder prediction 471 506 - -
Pvu2g1636 638 Pfam Associated with HOX 222 344 IPR006563 -
Pvu2g1636 638 Pfam Homeobox KN domain 414 453 IPR008422 GO:0003677|GO:0006355
Pvu2g1636 638 SMART HOX_1 397 461 IPR001356 GO:0003677
Pvu2g1636 638 SMART prehox3 216 346 IPR006563 -
Pvu2g1636 638 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 7 595 - -
Pvu2g1636 638 CDD homeodomain 397 458 IPR001356 GO:0003677
Pvu2g1636 638 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 595 - -
Pvu2g1636 638 Gene3D - 400 462 - -
Pvu2g1636 638 SUPERFAMILY Homeodomain-like 398 464 IPR009057 -
Pvu2g1636 638 MobiDBLite consensus disorder prediction 476 500 - -
Pvu2g1636 638 ProSiteProfiles 'Homeobox' domain profile. 394 457 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1636 Pvu-Chr2 30093457 30098184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1636 138 637 Homeobox Transcription Factor Family AT5G41410 47.890 3.43e-135 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pvu2g1636 POX 2.8e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1636 - - gmx:100803088 1132.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1636 2 30093457 30098184 Pvu2g1636 2 30093457 30098184 ECH
Pvu2g1636 2 30093457 30098184 Pvu2g3006 2 45531875 45535947 PCT
Pvu3g2093 3 41633931 41636245 Pvu2g1636 2 30093457 30098184 PCT