Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1634 ATGCTTTTGGGGTCATTACTTTATGATCAAAATATTGTCCCATTTCATCTCATGGTCCATGCTCCATCCCTGTCATTCTCAACAAAACCAAACCCCAATTTCGGTATTTCAGATCAAAATCTCACCCCTCTATTTAACTCCTCCTTCAAAACCAAACTGTCACCTCTTCTTCCCCATCTCAACACACTTCTGCTGTCACTCACAAACATGGGCTTTCCCGTTGGCTACACAGAATTGCTACTGCCCAAGGTGCTTGTGCAGCTGCTATCCCTATTGGGCCTCATCAGGAAACTCCTCACCCTCCTCTTGTGCTACATGGGCTTCCACGATTTCTTCCAACCCGACATTGCCTGGCCGGAGATCCTCCCGGAATTGCAGTCCATGTCGGCGGTGCTCATCCGGGAAATCCTGCCCGTGGTGAAATTCTCCGAGATGGCGGCGGCGGAGGCGGCGGAGAGTTGCGCGGTGTGTCTGTACGAGTTCGAGGGAGAGGACGAGATCAGACGGCTGACAAACTGCCGCCACATATTCCACAGAGGGTGTCTGGACCGTTGGATGGGGTACGATCAAAGGACGTGCCCCCTCTGTCGGACGCCCTTCATACCCCACCACATGCAAGCTGCCTTCAATGATAGACTCTGGGCTGCTTCAGGGATCCCTCAATTCCATTACCACGATGAATGA 684 0.5219 MLLGSLLYDQNIVPFHLMVHAPSLSFSTKPNPNFGISDQNLTPLFNSSFKTKLSPLLPHLNTLLLSLTNMGFPVGYTELLLPKVLVQLLSLLGLIRKLLTLLLCYMGFHDFFQPDIAWPEILPELQSMSAVLIREILPVVKFSEMAAAEAAESCAVCLYEFEGEDEIRRLTNCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPHHMQAAFNDRLWAASGIPQFHYHDE* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1634 227 SMART ring_2 154 196 IPR001841 -
Pvu2g1634 227 SUPERFAMILY RING/U-box 137 203 - -
Pvu2g1634 227 PANTHER BRH1 RING FINGER PROTEIN 70 224 - -
Pvu2g1634 227 CDD RING-H2 154 197 - -
Pvu2g1634 227 ProSiteProfiles Zinc finger RING-type profile. 154 197 IPR001841 -
Pvu2g1634 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 202 IPR013083 -
Pvu2g1634 227 Pfam Ring finger domain 153 197 IPR001841 -
Pvu2g1634 227 PANTHER RING ZINC FINGER PROTEIN-RELATED 70 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1634 Pvu-Chr2 30054720 30056036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1634 70 227 C3H Transcription Factor Family AT1G63840 57.927 4.84e-62 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1634 K16281 - gmx:102665617 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1634 2 30054720 30056036 Pvu2g1634 2 30054720 30056036 ECH
Pvu2g1634 2 30054720 30056036 Pvu2g3004 2 45494477 45494959 PCT