Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1621 ATGGGGAAGGGAAAACCTAGGGCCGTGGAGAAAGGTGTGGTAGGACCTAGTTTCAGTGTTGCATCATCGAGTATTCCTGCAGGGCCTGTGTATTACCCTACTGAAGATGAATTCAAGGATCCTTTAGAGTATATATACAAGATTAGACCAGAAGCTGAGCCTTATGGAATTTGTAAGATTGTGCCTCCCAAGAGTTGGAAACCCCCTTTTGCTTTGGATCTGCACTCTTTCACTTTCCCTACCAAGACTCAGGCCATTCACAAGCTCCAGGCTCGCCCTGCTTCATGTGACTCCAAGACCTTTGACTTGGACTACTCTAGGTTTTTGAAGGATCACTCTAGCAAGAAGTCCAGGAAAAGGGTTGTGTTCGAGGGGGCGGAGCTCGACTTGTGTAAGCTGTTCAATGCCGTGAAGCGCTATGGTGGTTATGATAAGGTTGTTGATGGGAAGAAGTGGGGGGATGTTGCCCGGTTTGTGAGGTCCAGTGGGAAGATTACGGATTGCGCTAAGCATGTGCTTTGTCAGCTGTACCGAGAACATTTGTATGATTACGAGAATTTTTATAACCAGATGAATCAAGGGACAGAAAAGAGTTGTAAGAAAAGCTTGTATGAGGAACAGAAGAGTGATTGTGGGGCGAAACCTTTGGTGTCGAAGAGGGTTCACAAGAGTGTCGATTGTTCGAAACCGAAGGATGGTAAAGTGCAAGGAGAAGAGCATGATCAGATTTGTGAACAATGTAAAAGTGGTCTGCATGGGGAGCTCATGCTTTTGTGTGATAGGTGTGATAAGGGATGGCATACATATTGTCTTTCCCCGCCATTGAAGCAAATTCCTCTGGGAAATTGGTATTGTTTTAACTGCTTGAATTCTGATGGGGACAGCTTTGGTTTTGTGCCCGGGAAGCACTATTCGTTGGAAGCTTTTAGACGGAAAGCGGATATGTCAAGGAGGAGATGGTTTGGATCAGGGCCTGTTTCAAGAGTGCAAATTGAGAAAAAGTTTTGGGATATTGTGGAGGGATTGGTTGGTGAGGTTGATGTCATGTATGGGAATGACTTGGATACATCTGTTTATGGGAGTGGTTTTCCACGTGTAGCTGATCAGAAACCAGAATCAATTGATGACAAATTATGGGAAGAATACTCAGCTAACCCTTGGAATCTTAATAACCTGCCTAAGTTGAAAGGTTCAATGCTCCGAGCTGTTCATCACAATATCACCGGTGTCATGGTACCCTGGCTATATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTACTCAATGAATTACCTGCACTGGGGAGAAGCAAAGTGCTGGTACAGTGTGCCTGGTAGTCAAGTCAGTGCTTTTGAGAAGGTGATGAGAAACAGTCTTCCCGATCTTTTTGATGCACAACCTGATCTGCTTTTTCAGCTTGTTACTATGCTAAACCCATCTGTATTGCAAGAAAATGGAGTTCCTGTCTACAGTACACTTCAGGAGCCTGGGAATTTTGTTATTACCTTCCCGAGGTCTTACCATGGAGGTTTCAATCTTGGTTTAAATTGTGCAGAGGCAGTCAATTTTGCTCCTGCCGACTGGCTACCACATGGTGCTTTTGGAGCTGATCTCTATCAGCGGTATCACAAAACTGCTGTCTTATCTCATGAGGAGCTTCTTTGTGTAGTGGCCCAGTATGGTGAAGTTGATGGCAGGGTGTCGTCTTATTTGAAGAACGAATTGTTGAGAATATCAGTTAAAGAAAAATCTCGTAGAGAGAAACTTTGGAAACATGGTATTATTAAGTCTTCTCGCATGGCTCCTCGAAAATGTCCCCAATTTGTGGGAACTGAAGAAGATCCAGCATGCATCATATGCCAACAATATCTCTATCTCTCTGCTGTTGTATGTGGTTGCAGGCCATCAGCTTTTGTCTGTCTAGAGCACTGGGAACACCTTTGTGAGTGCAAAACTGTTAAACTGCGTCTTCTCTATCGTCATTCACTTGCAGAATTGTATGACTTTGCCTATTCTATGGACAAATATACTTCTGAGGACAAAGCTGAGTGTAGAAGTATGAAAAAGCAGCCTTCATGTCTCAGTGCTTTGACCAAAAAGGTGAAAGGTAGCTCCATTACTTTTGCTCAACTTGCTACAGAGTGGCTTCTGCAGTCTAGTACTATTCTGCAGAATGTTTTTTTGCAAGATGCATTTGTTACTGCACTAAGGAAAGCTGAACAATTTCTTTGGGCTGGTTCTGAGATGGATTCTGTACGAGACATGGTAAGGAATTTGCTTCAAGCTCAGGAATGGGCAGAAGGGATAAGAGACTGTGTAACAAAAATTGAGTTATGGCTGTGTCATCGTGACTCCAGTGTAAAGAAGGTTCATTTAGAATTCGTTGATGAGTTGCTGAAATTTAGTCCTGTGCCTTGCAATGAGCCTTGTTATCATAAACTGAAGGAGTATGCAGAGGAAACAAGGTTGTTCGTTCAGGAGTTTGATACTGCTTTGTCGATGTGTTTAAATATGTCTGAGTTGGAACTTTTATACTCCAAAGCTTGTGGCTTACCCCTCTACGTGAAAGGAAATAAGAAATTGGAAGGGAAAATTTCTTCAACGAAGGCATGGCTGGATAGTGTCAGAAAGTGCCTCTCAGCAAGACAGCCTGCTACACTACATGTTGATGTTCTTTATAAACTAAAAGCGGAGTTTTTGGATCTTCAAGTTCAACTCCCGGAGATAAATTTGCTTCAGAATCTACTAAATCAAGCTGAATCTTGTAGTGCTCAATGTCATGATATGTTAGAAGGACCTATGAATCTCAAGAATGTTGGTTTGCTGCTTAAGGAATGGGAAAATTTTGCAGTTGATGTACCAGAGCTCAAGCTTCTAAGGCAATACCATTTGGATACCGTTTCATGGGTTTCCCACTTTAATGATGTTTTAGGGAGAGTTCACATGCAGGAAGATCAGCATAATGCAGTTGATGAATTGAATAGTATTTTTGAAGCTGGTTTATCTTTGAAAATTCAAGTTGATGAGTTGCCATTGGTTGAGATTGAGCTGAAGAAAGCTAACTGCCGGGAAAAGGCTGTGAAGGCACATGATTTTAAGATGCCTTTGGAATTCATCCAGCAACTGTTGAAGGAGGCCACCATGCTTCAAATTGAGGGAGAGAAACAATTTGTCAATTTATCTTGCATGCTTACTGTTGCCATTCCTTGGGAGGAAAGGGCTAAAGAGATGCTTTCACATGAGGCTTCTATTTCGGACTTTGAGGGCATGATCAGAGCTTCAGAGAACATATTTGTTATTCTTCCTTCACTTAATGATGTCAAGGATGCATTATCAGGAGCTAATTCCTGGTTAAAGAATTCTAAACCGTATTTCGTCTCTTCTATGCGGGCTTCAGATTCTTCACAGAATGTTGAGGACTTACAGATGTTGGTTTCTCAATCGAAGCATCTTAAAGTATCATTTAAAGAAAGAGGGATGCTTGAATTGGTTTTGAAGAACTGCAGAACATGGGAGCATGAAGCATGTTCTGTACTAAATGATGCCCAGTGCTTATTTGAACTGGAAAACTCTCTGCATGAAATAGACAGCGGTTTAATGTGTAAAGTGGAAGATTTGATTGTAAGAATCCAATCCACCACAGAATCCGGTATATCGCTTGGTTTTGACTTCAATGAGATTTCAAAACTTCAAGCATCTAGTTCTACGCTGCAATGGTGCAAAAGGGCCTTGTCTTTCTCCAATTGCTCTCCTTCTTTAGAGGACGTTTTGGAGGTTGCAGAAGGTCTTTCTCATTCATCTGTTTCTGGGGCTCTGTTGAAACTATTGATAGGTGGGCTTGAATGGCTTAGGAAGGCATTAGAGGCGATTTCTCGTCCTTGTAATTCTAGAAGACGCAAGTTGACTGACGTACAAGCTATTCTTACTGATTATAAGACTATTAATATGACCTTTACAGCAGTAAATATTCAACTTGAAGAGGCCATTGGAAAACATAAGTTGTGGCAAGAGCAAGTGTGCCAATTTTTTGGTCTAAGTCTTAGAGAACGATCTTGGTCTTCAATATTGCAGCTCAAGGAATATGGAGATACCATTGCCTTTAGTTGCTCTGAACTGGATTTGGTTTTATCTGAAGTTAAGAAGGTGGAAAATTGGAAGAGCACATGCATGGATAAACTAGGAACTTTATTCCAAGATGAAAATTTGCTACTTCATGCACTGGAGAAGATGAAACAGACCCTAGATAGATCGATCTTTATGTATGACAAATTGCAAAATCTGAAGGAACCAAACCTATGTATCTGCTGCTTTGATGATTCTGAAGATCAGGAATTTCTTACTTGTTCCACTTGTATGGACTGCTATCATCTGCAATGTGTTGGACTAACAGAAAAAGACGTGGCCGTTGAAAACTACCAGTGCCCATATTGTGAAATTCTAAGGGGTGAATTTTGTTATCATAATGGAGGTGCTCTCCTGAGGTTTGAGAAGAAGCGTGTTGAATTGAAAGTTCTTACTGAACTCATGTCTGATGCGGAAAATTTCTGTTTATGGATTGATGAAAGAGATGTTTTGAGTGAACTTGTTGAGAAAGCCCTTTCATGCAAATCTTTCTTGAAAGAAATTGTAATCCTTGCATCTGCTAATGTTGGTCAAGATATTTGCGTCATCTCTGAAAAATTGGCCACTGCTGTAAAGGCTTGCAATGTGGCTGTTGTCTATGATCAGAACGATATTTGTGACCTTGAGCTGACTTTAGCAAAAAACTCGTGGAAAGTTCAAGTCAATAGATTATTAAATGGTGTACCAAAGCCCACTATCCAGCATATTCAGAAGCATCTGAAGGAGGGACTTGCTATGGGCATATCACCTGAAGATCACTATATGTTGAAAATTACACAAGTGAATACCTTAGGTTTGCAGTGGGCAGAACTAGCCAAAAAGGTGGCATCGGATTCTGGGGCACTCAGCCTGGATAAAGTTCTTGAACTTGTAGTGGAAGGTGAAAAGTTGCCTGTTGATGCGAATGAGGAACTAAGGATGTTAAGGGCACGATGCATGCTTTACTGCATTTGTCGAAAGCCCTTCGATCCAGAAAGGATGATTGCATGTTGCCATTGTAATGAGTGGTATCACTTTGATTGCATGAAACTGCCATGCACAAGAGAGGTCTACATTTGTCCCGCGTGTACCCCATGTACAGAAGGATTACTTCCAAACCATGACAGATTAACTAGTGGTAAATTTGAGGAGCCTAAAACCCCGTCTCCCAGGCATTCAAACCCTAGAAAGAAACAGAAGAGAGATGTGCCCAATCTCACATGTGATCAAGATAGTGAGTGTAGGTATCCGAGTGGGATAGAATGTCTAAGGTGGCAAAATCGAAAGCCTTTCAGAAGAGCAGCTAAGAAACGTATTGAACTTCGAAGTCTTTCTCCATTTCTTTGCATTCAACGATAG 5481 0.4156 MGKGKPRAVEKGVVGPSFSVASSSIPAGPVYYPTEDEFKDPLEYIYKIRPEAEPYGICKIVPPKSWKPPFALDLHSFTFPTKTQAIHKLQARPASCDSKTFDLDYSRFLKDHSSKKSRKRVVFEGAELDLCKLFNAVKRYGGYDKVVDGKKWGDVARFVRSSGKITDCAKHVLCQLYREHLYDYENFYNQMNQGTEKSCKKSLYEEQKSDCGAKPLVSKRVHKSVDCSKPKDGKVQGEEHDQICEQCKSGLHGELMLLCDRCDKGWHTYCLSPPLKQIPLGNWYCFNCLNSDGDSFGFVPGKHYSLEAFRRKADMSRRRWFGSGPVSRVQIEKKFWDIVEGLVGEVDVMYGNDLDTSVYGSGFPRVADQKPESIDDKLWEEYSANPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEAKCWYSVPGSQVSAFEKVMRNSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSTLQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPHGAFGADLYQRYHKTAVLSHEELLCVVAQYGEVDGRVSSYLKNELLRISVKEKSRREKLWKHGIIKSSRMAPRKCPQFVGTEEDPACIICQQYLYLSAVVCGCRPSAFVCLEHWEHLCECKTVKLRLLYRHSLAELYDFAYSMDKYTSEDKAECRSMKKQPSCLSALTKKVKGSSITFAQLATEWLLQSSTILQNVFLQDAFVTALRKAEQFLWAGSEMDSVRDMVRNLLQAQEWAEGIRDCVTKIELWLCHRDSSVKKVHLEFVDELLKFSPVPCNEPCYHKLKEYAEETRLFVQEFDTALSMCLNMSELELLYSKACGLPLYVKGNKKLEGKISSTKAWLDSVRKCLSARQPATLHVDVLYKLKAEFLDLQVQLPEINLLQNLLNQAESCSAQCHDMLEGPMNLKNVGLLLKEWENFAVDVPELKLLRQYHLDTVSWVSHFNDVLGRVHMQEDQHNAVDELNSIFEAGLSLKIQVDELPLVEIELKKANCREKAVKAHDFKMPLEFIQQLLKEATMLQIEGEKQFVNLSCMLTVAIPWEERAKEMLSHEASISDFEGMIRASENIFVILPSLNDVKDALSGANSWLKNSKPYFVSSMRASDSSQNVEDLQMLVSQSKHLKVSFKERGMLELVLKNCRTWEHEACSVLNDAQCLFELENSLHEIDSGLMCKVEDLIVRIQSTTESGISLGFDFNEISKLQASSSTLQWCKRALSFSNCSPSLEDVLEVAEGLSHSSVSGALLKLLIGGLEWLRKALEAISRPCNSRRRKLTDVQAILTDYKTINMTFTAVNIQLEEAIGKHKLWQEQVCQFFGLSLRERSWSSILQLKEYGDTIAFSCSELDLVLSEVKKVENWKSTCMDKLGTLFQDENLLLHALEKMKQTLDRSIFMYDKLQNLKEPNLCICCFDDSEDQEFLTCSTCMDCYHLQCVGLTEKDVAVENYQCPYCEILRGEFCYHNGGALLRFEKKRVELKVLTELMSDAENFCLWIDERDVLSELVEKALSCKSFLKEIVILASANVGQDICVISEKLATAVKACNVAVVYDQNDICDLELTLAKNSWKVQVNRLLNGVPKPTIQHIQKHLKEGLAMGISPEDHYMLKITQVNTLGLQWAELAKKVASDSGALSLDKVLELVVEGEKLPVDANEELRMLRARCMLYCICRKPFDPERMIACCHCNEWYHFDCMKLPCTREVYICPACTPCTEGLLPNHDRLTSGKFEEPKTPSPRHSNPRKKQKRDVPNLTCDQDSECRYPSGIECLRWQNRKPFRRAAKKRIELRSLSPFLCIQR* 1827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1621 1826 Gene3D Cupin 14 125 - -
Pvu2g1621 1826 CDD ARID 97 185 - -
Pvu2g1621 1826 Pfam JmjC domain, hydroxylase 414 530 IPR003347 -
Pvu2g1621 1826 SUPERFAMILY FYVE/PHD zinc finger 238 291 IPR011011 -
Pvu2g1621 1826 ProSiteProfiles ARID domain profile. 95 189 IPR001606 GO:0003677
Pvu2g1621 1826 ProSitePatterns Zinc finger PHD-type signature. 1440 1484 IPR019786 -
Pvu2g1621 1826 MobiDBLite consensus disorder prediction 1751 1765 - -
Pvu2g1621 1826 Pfam PHD-finger 243 290 IPR019787 -
Pvu2g1621 1826 SUPERFAMILY FYVE/PHD zinc finger 1691 1743 IPR011011 -
Pvu2g1621 1826 Pfam jmjN domain 29 62 IPR003349 -
Pvu2g1621 1826 CDD PHD_RSF1 244 288 - -
Pvu2g1621 1826 SUPERFAMILY Clavaminate synthase-like 367 562 - -
Pvu2g1621 1826 ProSitePatterns Zinc finger PHD-type signature. 1697 1737 IPR019786 -
Pvu2g1621 1826 SMART JmjN_1 27 68 IPR003349 -
Pvu2g1621 1826 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1681 1739 IPR013083 -
Pvu2g1621 1826 Gene3D Cupin 270 553 - -
Pvu2g1621 1826 Pfam C5HC2 zinc finger 624 675 IPR004198 -
Pvu2g1621 1826 PANTHER LYSINE-SPECIFIC DEMETHYLASE 25 1021 - -
Pvu2g1621 1826 SUPERFAMILY FYVE/PHD zinc finger 1436 1485 IPR011011 -
Pvu2g1621 1826 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Pvu2g1621 1826 SMART PHD_3 1439 1485 IPR001965 -
Pvu2g1621 1826 SMART PHD_3 243 289 IPR001965 -
Pvu2g1621 1826 SMART PHD_3 1696 1738 IPR001965 -
Pvu2g1621 1826 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1413 1490 IPR013083 -
Pvu2g1621 1826 SUPERFAMILY ARID-like 78 198 IPR036431 GO:0003677
Pvu2g1621 1826 ProSitePatterns Zinc finger PHD-type signature. 244 288 IPR019786 -
Pvu2g1621 1826 Pfam ARID/BRIGHT DNA binding domain 101 185 IPR001606 GO:0003677
Pvu2g1621 1826 MobiDBLite consensus disorder prediction 1751 1779 - -
Pvu2g1621 1826 ProSiteProfiles Zinc finger PHD-type profile. 241 291 IPR019787 -
Pvu2g1621 1826 Pfam PLU-1-like protein 989 1181 IPR013637 -
Pvu2g1621 1826 Pfam PLU-1-like protein 1139 1395 IPR013637 -
Pvu2g1621 1826 SMART ARID_2 92 185 - -
Pvu2g1621 1826 SMART cupin_9 381 547 IPR003347 -
Pvu2g1621 1826 SMART bright_3 96 190 IPR001606 GO:0003677
Pvu2g1621 1826 ProSiteProfiles JmjC domain profile. 381 547 IPR003347 -
Pvu2g1621 1826 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 25 1021 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1621 Pvu-Chr2 29918258 29937715 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1621 28 92 JUMONJI Transcription Factor Family AT1G08620 56.522 2.47e-09 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pvu2g1621 PLU-1 5.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1621 K11446 - gmx:100789512 3270.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1621 2 29918258 29937715 Pvu2g1621 2 29918258 29937715 ECH
Pvu3g2143 3 42230290 42237544 Pvu2g1621 2 29918258 29937715 PCT