Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1599 ATGACCCCATTAGCGGTGGAGCAAACAGGTGAATCAGCGCCGGCGGACTTGCAGAGATCCATTCCGACGCCGTTTCTGACGAAGACGTACCAGCTCGTGGACGATCCCTCTGCGGATGACCTAATTTCCTGGAACGAAGATGGCACGAGTTTCATCGTTTGGCGGCCCGCGGAATTCGCACGTGATTTGCTTCCGAAGTACTTCAAACACAACAACTTTTCCAGTTTTGTCCGTCAGCTAAACACCTATGGATTTCGGAAGGTTGTCCCTGACCGTTGGGAATTCGCCAACGACTGTTTCCGGCGAGGTGAGAGAACTCTGCTTCGCGACATACAACGCCGGAAAATACTACTGGTGCCTCCAACTGCTGCACCGTCAGTAGTCACAGCCAATACTGTAACGGTGGCTGTGGCGGCACCGGCGATCAGAGCAGTGTCTCCAACGACTTCCGGCGACGAACAGGTACTATCCTCGAACTCATCTCCGATTGCTGGAAATAGTAATAATACAGTGCACCGCACCACGAGTTGCACTACTGCGCCCGAGCTGTCAGAAGAAAATGAACGGCTTAGAAAAGAGAACATGCAACTGAATCAAGAGTTGAGTCAATTGAAGAGTTTGTGTAATAACATAATCGCTTTGATGACCAATTACGCTTCTGGTTTTAGCCGTCAGCAGTTAGAATCGTCCACTAGTGCTGTGAGGACAGTGCCGGTGCCGGAAGGGAAGGCTCTTGAGCTTTTGCCTGCAAAGCATCTTTCGTCGGCTGATGACGCCGTGCATGTCGGTGGCGCTGCCGGCTTCGTGCCATGTACGACGGCGAATGCGGCGGAGGCAGAGGTTCCCAAGCTGTTTGGGGTTTCTATTGGGTTGAAACGGTGTAGGACAGAGTGCGAAGCGGAACAGGAGGGAGAAGAACAGAATCAAATGCACACGCTAGCACTAACGCAGGCACAGACACAGACACAATCGTCGCAAGAACCAGATGGCGGGCCAGATGTGAAATCTGAGCCGCTTGATGGGGATGAGTCGGATGATCAGGATGGTCGCTGGCTGGAGCTTGGGAAATAA 1071 0.5257 MTPLAVEQTGESAPADLQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERTLLRDIQRRKILLVPPTAAPSVVTANTVTVAVAAPAIRAVSPTTSGDEQVLSSNSSPIAGNSNNTVHRTTSCTTAPELSEENERLRKENMQLNQELSQLKSLCNNIIALMTNYASGFSRQQLESSTSAVRTVPVPEGKALELLPAKHLSSADDAVHVGGAAGFVPCTTANAAEAEVPKLFGVSIGLKRCRTECEAEQEGEEQNQMHTLALTQAQTQTQSSQEPDGGPDVKSEPLDGDESDDQDGRWLELGK* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1599 356 MobiDBLite consensus disorder prediction 150 183 - -
Pvu2g1599 356 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g1599 356 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g1599 356 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2B 11 340 - -
Pvu2g1599 356 Gene3D - 18 115 IPR036388 -
Pvu2g1599 356 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g1599 356 Coils Coil 180 207 - -
Pvu2g1599 356 MobiDBLite consensus disorder prediction 302 356 - -
Pvu2g1599 356 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 340 IPR027725 -
Pvu2g1599 356 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Pvu2g1599 356 MobiDBLite consensus disorder prediction 307 330 - -
Pvu2g1599 356 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g1599 356 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g1599 356 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1599 Pvu-Chr2 29686274 29687420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1599 16 356 HSF AT4G11660 52.408 1.34e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pvu2g1599 HSF_DNA-bind 1.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1599 K09419 - gmx:100791020 555.058